Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1203 143 3e-29 seq155 143 3e-29 >seq1203 Length=218618 Score = 143 bits (158), Expect = 3e-29 Identities = 121/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 || |||| ||||||||| || |||| |||||||| |||||||| |||||||| || ||| Sbjct 2105 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 2046 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 ||||| ||||||||||||||||||| || || ||||| || | || ||||||||| Sbjct 2045 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1986 Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||| ||||||||| ||||| ||||| Sbjct 1985 CAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1957 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/148 (74%), Gaps = 8/148 (5%) Strand=Plus/Minus Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 |||| | || || |||||||||||||||||||| || || || || |||||||| ||| Sbjct 631 GTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTCCCCCTCCTC 572 Query 146100 CCT----GTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGA 146155 || ||| ||||| | | | | |||||| | ||||| |||||||| ||||||| Sbjct 571 TCTCTCTGTGA---AGCCCAGGCTGT-CTAGGAAGGCACGGGAGCCGTTGGCATCCCAGA 516 Query 146156 TCTTGACGCCCCTCGCGGAGAGCTCATT 146183 |||| || ||| || | || ||||| || Sbjct 515 TCTTTACTCCCTTCTCCGATAGCTCCTT 488 >seq155 Length=1349651 Score = 143 bits (158), Expect = 3e-29 Identities = 121/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 || |||| ||||||||| || |||| |||||||| |||||||| |||||||| || ||| Sbjct 1338972 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 1338913 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 ||||| ||||||||||||||||||| || || ||||| || | || ||||||||| Sbjct 1338912 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1338853 Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||| ||||||||| ||||| ||||| Sbjct 1338852 CAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1338824 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/148 (74%), Gaps = 8/148 (5%) Strand=Plus/Minus Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 |||| | || || |||||||||||||||||||| || || || || |||||||| ||| Sbjct 1337498 GTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTCCCCCTCCTC 1337439 Query 146100 CCT----GTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGA 146155 || ||| ||||| | | | | |||||| | ||||| |||||||| ||||||| Sbjct 1337438 TCTCTCTGTGA---AGCCCAGGCTGT-CTAGGAAGGCACGGGAGCCGTTGGCATCCCAGA 1337383 Query 146156 TCTTGACGCCCCTCGCGGAGAGCTCATT 146183 |||| || ||| || | || ||||| || Sbjct 1337382 TCTTTACTCCCTTCTCCGATAGCTCCTT 1337355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590008505986360