Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq421 113 5e-20 >seq421 Length=752392 Score = 113 bits (124), Expect = 5e-20 Identities = 181/256 (71%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| ||||||||||| | |||||| | || |||||| |||| || |||| Sbjct 531216 GAACTTCTCAAAGTTCCAGGCTATGTCGTTTCTGCTCACTGGGCTCCAGATGATCAGCTT 531157 Query 83203 GGGGTCGCTCACGAGCGTGCTCATG--TCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGG 83260 |||||| ||| || | | | | ||||| || || || || ||| ||| Sbjct 531156 GGGGTCATTCATCAGGGA--TGAAGGCTCGTCACTGGGGAATGGGAGCTTTTCTTTGAGG 531099 Query 83261 AAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAA 83318 || | || || ||||| || |||| | | ||||| || |||||| | |||| || Sbjct 531098 AACACAAACAGGGGATGGGCATCCTTCC--CATTGACGTCCACCTTCTCCAGGAGCTGAA 531041 Query 83319 AGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCAT 83378 | ||||||||||||||||| ||||||||||| | ||||||||| | | ||| || ||| Sbjct 531040 ACTTCGGCTCGAAGCCGTTTCCAGGACGGACATACTTCAGGGACAGGAGGATTTCTTCAT 530981 Query 83379 TCTGGGCGTTTTCCTG 83394 ||| | ||| ||||| Sbjct 530980 TCTTGCAGTTCTCCTG 530965 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/144 (74%), Gaps = 10/144 (7%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| || || | || || || || |||||| ||| ||| Sbjct 530423 CCTGATGGCCGAACTGGTTGCAGGGTATTCCCAGGACAACGAGCCCCTT-GCT----GGC 530369 Query 83451 G--CCGCT---GCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 | ||||| | |||||||||||||| ||||| |||| |||||| | |||||||| || Sbjct 530368 GTACCGCTCGTGGAGCTCGTTCATCTGGGTGTAATCCCTGACCGTCGTGCCTCAGAGAGA 530309 Query 83506 CGCTACGTTCTCGATGAGCAAGAC 83529 ||| || ||||| || || | ||| Sbjct 530308 CGCGACATTCTCAATAAGGACGAC 530285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608726339380360