Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq351 109 5e-19 >seq351 Length=862037 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | |||||| || | || |||||||| ||||| Sbjct 703916 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 703857 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || |||||| || Sbjct 703856 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTG 703797 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | |||||| || | ||| |||||||| ||||| | || Sbjct 703796 ACGTTCTCGATGGTGTCGCTTGGCTCCACCTCAAGGGTGATGGTCTTACCGGTGAGGGTC 703737 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || ||||| || Sbjct 703736 TTCACAAAGATCTGCATGTT 703717 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || | || |||||||| || || || | || || ||||||||||| ||| Sbjct 686715 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGGGG 686656 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||| ||||| || |||||| ||||| | | | || || | ||||||| Sbjct 686655 GATGCCCTCCTTATCTTGGATCTTAGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCAC 686596 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| ||| ||||||||||| || | |||||||| || || ||||||||| Sbjct 686595 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATTTTG 686544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422211550556444