Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq258 147 2e-30 seq351 138 1e-27 seq197 98.7 1e-15 >seq258 Length=1028905 Score = 147 bits (162), Expect = 2e-30 Identities = 114/136 (84%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||| ||||| ||||| ||||| ||||||| || ||| || ||| Sbjct 692500 GGAGAGCGTGTGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCC 692559 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 692560 GCCATCTTCTGGCTGAAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTC 692619 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 692620 ATCAGCAGAGACGAGG 692635 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||| ||||| || || ||||| ||||||| || ||| || ||| Sbjct 706731 GGAGAGCGTGTGGTGGCGTTCGCCGCAGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCC 706672 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 706671 GCCATCTTCTGGCTGAAGAAACGCGGCCTGATGCCTGGCCTGACCTTCAGCAACGAGCTC 706612 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 706611 ATCAGCAGAGACGAGG 706596 Score = 104 bits (114), Expect = 2e-17 Identities = 100/123 (81%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCA 116742 ||||||| |||||||| ||| | ||| |||||||| | || ||| | | |||||| || Sbjct 691912 AGGTGGATCTGTCCAAAGACCTGCAGC-ACTGGGAGTCTCTGAAACCAGA-CGAGCGTCA 691969 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| | |||| |||| || |||||||||||||||||||||||||||||||| || Sbjct 691970 CTTCATCTCGTACGTTTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCT 692029 Query 116803 GGT 116805 ||| Sbjct 692030 GGT 692032 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||||||||||||| | ||||| |||| ||||| || || || Sbjct 692115 GGTGGAGCGCTTCACCCAGGAGGTGCAGGTGACAGAGGCCAGGTGTTTCTATGGTTTCCA 692174 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||| ||| Sbjct 692175 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACCTAC 692229 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||||||||||||| | ||||| |||| ||||| || || || Sbjct 707116 GGTGGAGCGCTTCACCCAGGAGGTGCAGGTGACAGAGGCCAGGTGTTTCTATGGTTTCCA 707057 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||| ||| Sbjct 707056 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACCTAC 707002 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||| ||| | ||| |||||||| |||| | ||||| || Sbjct 707319 AGGTGGATCTGTCCAAAGACCTGCAGC-ACTGGGAGTCTCTGAAATCAGAGGAGCGTTAT 707261 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 || ||| ||||| |||| || |||||||||||||||||||||||||||||||| ||| Sbjct 707260 TTTATCTCTCACGTTTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 707201 Query 116804 GT 116805 || Sbjct 707200 GT 707199 >seq351 Length=862037 Score = 138 bits (152), Expect = 1e-27 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| || || ||||||||| | || || || | Sbjct 703716 AAACATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTTGAGGTGGAGCC 703775 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | ||||| | | | |||| |||||| || || | || || |||||||||||| | | Sbjct 703776 AAGCGACACCATCGAGAACG-TCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCCCCTG 703834 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || ||||| |||||||| || | |||||||| ||||| Sbjct 703835 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACT 703894 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| || || || || | || | ||||| ||| Sbjct 703895 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGTCTCAGGGGTGGC 703947 Score = 113 bits (124), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| ||||| ||||| ||||||||| | || || || || Sbjct 686545 AAAATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 686604 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | ||| | |||| || || | || || |||||||||||| | ||| Sbjct 686605 AGCGACACCATTGAAAATGTGAAGGCTAAGATCCAAGATAAGGAGGGCATCCCCCCTGAC 686664 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 ||||| | || |||| ||| || || |||||||| || | |||||||| Sbjct 686665 CAGCAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCT 686714 >seq197 Length=1194064 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||||||| || || || || ||||| ||||||| || ||| || || Sbjct 1112577 GGGGAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATTTGCT 1112636 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| | ||||| ||||| | ||||||||||||||||| || ||| ||| || ||| Sbjct 1112637 GCCATCTACTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTTACCTTCTCCAATGAACTC 1112696 Query 117152 ATCTCCAGGGACGA 117165 ||| |||||| || Sbjct 1112697 ATCAGCAGGGATGA 1112710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515159569817840