Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1203 104 2e-17 seq155 104 2e-17 >seq1203 Length=218618 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181 ||| |||||||| | || | || | |||||| || ||||| |||||||||||||| || Sbjct 2106 ATGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACC 2047 Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 ||| || || || | || || | |||||| || |||| ||||||||| ||||| ||||| Sbjct 2046 CATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTG 1987 Query 97242 ACTCAATACATGACAGGGGGGCAACGCCAT 97271 | | | || |||||||||| ||||| Sbjct 1986 GCAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1957 >seq155 Length=1349651 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181 ||| |||||||| | || | || | |||||| || ||||| |||||||||||||| || Sbjct 1338973 ATGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACC 1338914 Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 ||| || || || | || || | |||||| || |||| ||||||||| ||||| ||||| Sbjct 1338913 CATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTG 1338854 Query 97242 ACTCAATACATGACAGGGGGGCAACGCCAT 97271 | | | || |||||||||| ||||| Sbjct 1338853 GCAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1338824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346744867484630