Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq656 143 2e-29 seq351 104 2e-17 >seq656 Length=490082 Score = 143 bits (158), Expect = 2e-29 Identities = 309/452 (68%), Gaps = 9/452 (2%) Strand=Plus/Minus Query 133512 GCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTT 133570 ||||| |||||||| ||||||| ||||| |||| ||||| || ||| || || ||| Sbjct 300387 GCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGAT-GTT 300329 Query 133571 GACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCC 133628 || | | || || || ||| ||| | | | | || | || | || ||||| ||| Sbjct 300328 GA-GCAGTTGAGCTTCTGGGCTTTCGAACGGG-TAACGCATCAGGATGAAGGCGTCTGCC 300271 Query 133629 AAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCC 133688 |||||||| | |||| |||||||| || || ||| ||| |||||| | |||| Sbjct 300270 AAACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGT 300211 Query 133689 GTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAA 133748 ||| |||| ||||| || ||||||||||| || || ||||| | || || | Sbjct 300210 ACGGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACC 300151 Query 133749 TGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCA 133808 |||| | |||| || ||| || | ||| |||| || |||||| ||| Sbjct 300150 GAGGCCAGCTTCTTAAAGTCGAAAGTCC--GCTCAGGCGT-GACGTACATGTTGAGGGCG 300094 Query 133809 ATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCG 133868 || ||| || ||||| || ||| ||||| || | | |||| |||||||| | | Sbjct 300093 ATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTG 300034 Query 133869 CAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGA 133928 |||||||||||||| ||||||||||||| || | || ||||| | ||||| Sbjct 300033 CAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCG 299974 Query 133929 TCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 |||||||| |||||||| ||| |||||||| Sbjct 299973 TCCTTGTAAAGCATGTAGGGCGTCCCGGTTTC 299942 >seq351 Length=862037 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 703928 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 703869 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || | |||||| || || || ||||||||||| || Sbjct 703868 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 703809 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 703808 ATCTTAGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCAAGGGTGATGGTCTTA 703749 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || ||||| ||||||||| Sbjct 703748 CCGGTGAGGGTCTTCACAAAGATCTGCATG 703719 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 ||||| ||| || ||||| ||||| ||| |||| || | |||||| || || || ||| Sbjct 686711 GTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATG 686652 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 |||||||| ||| || || || || | ||| | |||||| || ||| ||||| Sbjct 686651 CCCTCCTTATCTTGGATCTTAGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCC 686592 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||| | || ||||| || || ||||| || || |||||||| Sbjct 686591 AGGGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 686548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433781444815228