Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq259 104 4e-17 >seq259 Length=1025966 Score = 104 bits (114), Expect = 4e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 51887 TAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTAT 51946 |||| |||| | |||| ||| | || |||||||| || || ||| |||| || |||| Sbjct 549521 TAGCAGGAGCTCTCTGGTGGTATTTCATCTCCAAAGGCATTGAGTACCTGGACACAGTAT 549462 Query 51947 TTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTA 52006 ||||||| || |||||||| || || ||||||| || || ||||| || || || | | Sbjct 549461 TTTTCATTCTGAGGAAAAAGTTCAACCAGGTTACCTTCCTGCACGTCTACCACCACTGCA 549402 Query 52007 CTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | ||||| || || | ||||| || || || ||| | || ||||| ||| Sbjct 549401 CCATGTTCACGCTCTGGTGGATTGGCATCAAGTGGGTGGCAGGAGGACAG 549352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923089951510360