Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq542 111 2e-19 seq3060 102 9e-17 seq66 102 9e-17 seq359 98.7 1e-15 seq10 98.7 1e-15 seq2923 96.9 4e-15 seq1942 95.1 1e-14 seq273 87.8 2e-12 seq340 82.4 9e-11 >seq542 Length=601952 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||||||||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 479567 AAAAATTTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 479626 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 479627 TCACCACTATACTAACGAGGA 479647 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 ||||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 485734 AATTTCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCA 485675 Query 60120 CCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 485674 CCACTATACTAACGAGGA 485657 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 486877 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 486936 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 486937 CTATACTAACGAGGA 486951 >seq3060 Length=10288 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 9940 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 9881 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 9880 TATACTAACGAGGA 9867 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/84 (86%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 60057 AAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||| ||| |||| || | |||||| |||||| ||||||||||||||||||||| | Sbjct 9282 AAAAAGTTTAAACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 9223 Query 60114 TACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||| |||||| Sbjct 9222 TACTCACCACTATACTAACGAGGA 9199 >seq66 Length=1849609 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 279405 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 279346 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 279345 TACTAACGAGGAGTGA 279330 >seq359 Length=839850 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 420361 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 420420 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 420421 TACTAACGAGGA 420432 >seq10 Length=2910258 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 64276 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 64217 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 64216 TACTAACGAGGA 64205 >seq2923 Length=11969 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | ||||| || | ||||||||||||| || |||||||||||||||||| ||||| Sbjct 6390 AAAAGTGTCTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACT 6331 Query 60118 CACCACTATACTACCGAGGATTG 60140 |||||||||||| |||||| || Sbjct 6330 GACCACTATACTATCGAGGACTG 6308 >seq1942 Length=70173 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||||||||||| ||||||||| | | ||||||||||||| Sbjct 69859 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCTGCGTGACAGTCAGGGATACTCACCACTA 69800 Query 60126 TACTACCGAGGATTGAA 60142 ||||| ||||| || || Sbjct 69799 TACTAACGAGGGTTCAA 69783 >seq273 Length=991863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 505655 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCTGCGTGACAGGCAGGGATACTCACCACTA 505596 Query 60126 TAC 60128 ||| Sbjct 505595 TAC 505593 >seq340 Length=880887 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||| |||| |||||||||||| ||||||||| |||||| |||||| Sbjct 482043 CTCCTCGTCTGGGAATCAAACCTTGGTCTCCCGCG-GACAGGCGGGGATACTCCCCACTA 482101 Query 60126 TACTACCGAGGA 60137 | ||| |||||| Sbjct 482102 TGCTAACGAGGA 482113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571751419260520