Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq183 206 2e-48 >seq183 Length=1254102 Score = 206 bits (228), Expect = 2e-48 Identities = 584/882 (66%), Gaps = 20/882 (2%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| |||| ||| | | || || ||||| ||||| |||||| ||||||| ||| Sbjct 17842 CCTCTTAGTGAAGAGGAGGCAAATTTTCCTATTGCGTACTCCATGGTGATCCATGAAAAG 17901 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||||| | || ||||| | | ||||| ||||||||| | |||||||| Sbjct 17902 ATTGAGATGTTTGAAAGACTCCTGCGGTCTATCTATGCTCCTCAGAACCTCTACTGTGTT 17961 Query 107808 CACGTGGATGTGAAGTC--CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 || || ||| ||| || | | | || ||||| || ||| || | | || |||||| Sbjct 17962 CATGTTGATCAGAAATCTTCTCTG-GATTTTCACAG-GGCTGTGAGAGAAATAGTTTCCT 18019 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 |||| |||||||| ||||| |||||| || | || || ||||| |||||||||| Sbjct 18020 GCTTTCCCAATGTTTTCATAAGCAGTAAATTAGAAAGAGTTGTGTATGCTTCCTGGTCCA 18079 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAG---TGCCATGGA 107982 |||| || || || ||||| || ||| |||| |||| |||| | | | |||| Sbjct 18080 GAGTACAGGCAGATCTGAATTGCATGAAAGA---TCTCCTACGCTCCGATATCCAGTGGA 18136 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||| | ||||| || || |||||||| || || || || ||||| |||||||| Sbjct 18137 AGTACCTGCTGAACACTTGTGGGACAGATTTTCCAATCAAAACCAACAGGGAGATGGTGA 18196 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG-AGGTACCTTCTGAGTCC 108101 || || || | || || | ||||| ||||| | | || ||| | || | | Sbjct 18197 GAGCTCTGAAAGCCCTCAATGGGAGAAACAGCATGGAAACCGAAGCCACCAAC-GACTAC 18255 Query 108102 aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAG 108161 || ||| ||||||| | |||| | | | || || |||| | | || || | Sbjct 18256 AAGAAAGGTCGCTGGCAGTACCACCACAATGTCACCAACACGGTTGTCAGGACGGGCGTG 18315 Query 108162 ATGAAGGACCCTCCCCCTGAT-AATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220 | |||| ||| || || ||| | ||||||||| |||| || ||||| ||| | | Sbjct 18316 AGGAAGAGCCCACCACC-GATCAGGAGCCCCATGTTCTCAGGAAACGCCTACTTTATTGT 18374 Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATG 108280 ||| | |||||||| |||| | | | ||| | || | | | || || Sbjct 18375 CTCAAGGGCCTTTGTGAAACACATAATGCAGAACAGAGAGGTGCAGAACTTCATAGAGTG 18434 Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCG 108338 || || || || || ||||| || || || | ||||| ||||| ||| | ||| || Sbjct 18435 GGAGAAGGATACGTACAGCCCGGATGAGCATATGTGGGCTACCCTGCAGAGGATGCCCCA 18494 Query 108339 TGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATC 108398 || | ||||| || | || | ||| || || | || |||||| || || Sbjct 18495 TG--TTCCTGGATCAGCCCCCGCTAATGGCAAATACGACGTGTCGGACATGCAGGCTCTC 18552 Query 108399 GCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCA 108458 ||||| ||||||||| |||| || ||||| || |||| || || || || Sbjct 18553 TCCAGGGCAGTCAAGTGGTCTTACCTAGAAGGAGACGTGAGCAAAGGAGCTCCCTACTAC 18612 Query 108459 CCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGG 108518 || ||| | || ||| |||| | |||| | || || || || ||||| ||| Sbjct 18613 CCATGCACAGGGGCCCACAGGAGATCTGTCTGTGTGTATGGAGCTGGAGACCTCCTGTGG 18672 Query 108519 ATTCTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 | || ||| | || |||||||| ||||| ||||||||||| Sbjct 18673 CTCCT-GAGACAGCAGCACCTCTTTGCAAATAAGTTTGACCC 18713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348229499933766