Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq656 125 2e-23 >seq656 Length=490082 Score = 125 bits (138), Expect = 2e-23 Identities = 619/981 (63%), Gaps = 42/981 (4%) Strand=Plus/Plus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520 ||||| |||||| | | || ||| |||||||||| || |||||| | | ||||||| Sbjct 298790 TTCGATAAAATCACCTCCCGTATCCAGAAGCTCTGCTACGGTCTGAATGCAGACTTCGTG 298849 Query 248521 GATCATGTGGCC---ATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACG 248577 |||| |||| ||| || ||| || || ||| | |||| ||| || || || Sbjct 298850 GATCC---GGCCCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACCACC 298906 Query 248578 ACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGAC 248637 || || ||||| |||| ||||||| ||||| | || ||| ||||| ||| Sbjct 298907 GTGGAGCTAGACACGCTAGCAGCGGAGATCGCGGCCACCCTGACGACCAAGCACCCGGAC 298966 Query 248638 TACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAA-AGAGTC 248696 ||| | | || |||| ||||| |||||||| | |||||||| || || || | ||| Sbjct 298967 TACGCCATCCTCGCCGCCAGGATTGCCGTCTCCAACCTTCACAAGGAGACCAAGAAAGTA 299026 Query 248697 GTTCGTCGAAACCATGGCTGACCTA-----------CATGCCTATGGG---ATGG---TC 248739 ||| |||| |||| ||||| || ||| || ||| || Sbjct 299027 -TTCAGCGAAGTGATGGAAGACCTGTACAACTACGTCAACCCTCTGAACAAATGCCACTC 299085 Query 248740 GCCGATGACGTCCACACCG----------TCATTCAGGACAACGCGCACCTCCTGGACGG 248789 || |||| |||| | | || ||| ||| ||| ||| ||| | Sbjct 299086 CCCCATGATCTCCAAGCAGACCCTCGACATCGTTCTGGAGAACAAAGACCGCCTCAATTC 299145 Query 248790 CGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAA 248849 | | || || | || |||||| ||| | ||||||| |||||||| |||||| Sbjct 299146 CTCCATCATTTATGACAGAGATTTTTCCTACAACTTCTTTGGCTTCAAAACCCTGGAGCG 299205 Query 248850 ATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCG 248909 || ||||| || || || | || || | | || || ||||||||| | ||| | Sbjct 299206 CTCCTATCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGCCCGCAGCACATGCTCATGAG 299265 Query 248910 AGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAAT 248969 ||| | ||||| || ||| | ||||| || || | ||||| |||| | | Sbjct 299266 GGTGTCGGTCGGTATCCACGGAAAAGACATTGACGCCGCCATTGAGACCTACAACCTGCT 299325 Query 248970 GAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAA 249029 | || ||| | || || ||| | || || |||||||||||||| ||| | Sbjct 299326 GTCGGAGAAGTGGTTCACCCACGCCTCGCCAACCCTCTTCAACGCCGGGACCAACCGGGC 299385 Query 249030 TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGA 249089 |||||| | ||||| || || |||||| | || ||| |||| ||||| || || Sbjct 299386 GCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGCATCTACGA 299445 Query 249090 CACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTC 249149 ||| || || ||| || ||||| |||| ||| ||||| ||||| | | || Sbjct 299446 CACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGGATCGGCGTGGCGGTGAG 299505 Query 249150 CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGT 249209 | |||| || ||| || |||||| || || || || | |||| | || Sbjct 299506 CTGCATCAGATCGACTGGGAGCTACATCGCTGGCACTAACGGCAACTCCAATGGGCTGGT 299565 Query 249210 ACCCCTCCTTCGATGCTTT--GAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC--- 249264 || | || || | ||| | ||||||| | | | |||||| || | Sbjct 299566 CCCGATGCTGCG--GGTTTACAACAACACCGCCCGCTATGTTGACCAGGGTGGCAACAAG 299623 Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 ||| ||| | ||||||||||| |||| ||||||| ||| | || || |||||| Sbjct 299624 CGACCGGGAGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGATGTGTTCGACTTCCTG 299683 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 || |||| ||||||| || || ||| |||||| | ||||| ||||||| | || Sbjct 299684 GAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTATTCTACGCCATG 299743 Query 249385 TGGGTCTCCGACTTGTTCATG 249405 ||| || | ||| |||||||| Sbjct 299744 TGGATCCCTGACCTGTTCATG 299764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073639018085312