Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq656 457 8e-124 seq258 116 3e-21 seq761 114 1e-20 >seq656 Length=490082 Score = 457 bits (506), Expect = 8e-124 Identities = 1045/1562 (67%), Gaps = 39/1562 (2%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 |||||||||| || | |||| || |||| || ||| | || || | || ||| Sbjct 300705 TCGTTCCACAGCCCCCGCTCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAAC 300646 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||| | ||| | ||| ||| |||||| ||| | | |||| || || ||| Sbjct 300645 TCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTG 300586 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||||||||| || || || ||||| || |||| ||| || ||| ||| Sbjct 300585 TTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTC 300526 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||| || | || || ||| |||| | ||||||||||| |||| || ||| Sbjct 300525 ACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCGGTGGGAGTC 300466 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| || | | ||| || | || |||||||||||| Sbjct 300465 ---TTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGTC 300409 Query 22709 TCGTACGGA-CCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 ||||| ||| ||| | | || || ||||||||||| ||||||| ||| |||| || || Sbjct 300408 TCGTAAGGACCCAGCTCT-GCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGAT 300350 Query 22768 AGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG 22824 ||||||||||| | | ||| || || || | | ||||||| |||| ||| Sbjct 300349 GGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTCTG---GGCTTTCGAACGGGTAACG 300293 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT---TTTT 22881 ||||| | ||| ||||| |||| |||||| || || || ||||| || |||| ||| Sbjct 300292 CATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTT 300233 Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 || ||| | ||| ||||| | || || | || || || | ||||| | Sbjct 300232 ---GTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGATCTCAATGATCTTGTTC-A 300177 Query 22942 GTTTCTGGTCACAAT---TTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGA 22998 | |||| |||| || || || | | ||||||| || | ||| Sbjct 300176 GGTTCT--TCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTCG--AAAGTCCGC 300121 Query 22999 T--TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 | | || || |||||| |||||| ||||| || || || || ||||||||||| Sbjct 300120 TCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTCC 300061 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 ||| |||||||| || || || || || || ||||| ||||| || ||||||| || Sbjct 300060 TTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTC 300001 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 ||||||||| || | ||||| | |||||||| |||||||| ||||| || || || Sbjct 300000 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCC 299941 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGAACACGT--CGCACGTAC 23233 ||| ||||||||||| || ||| | ||||| | | | ||| | ||| | Sbjct 299940 GTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCTTCACCACCTTCTTCAC---C 299884 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 || ||||| | || || || ||| | | ||||| || | || | || ||| || Sbjct 299883 CTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCC 299824 Query 23294 AGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTC 23353 || ||||| | | | |||||||| || ||| || | || || | || Sbjct 299823 AGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACTCTCTTC 299764 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 || || || || || ||||| | |||||||| || || | ||| | | |||||| || Sbjct 299763 ATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTCTGCTCCTCCTTT 299704 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 || |||||||| |||| |||| ||||| ||||| || ||||||||||| ||||| Sbjct 299703 CCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCACGGCTCCAGGTAC 299644 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | ||| || || ||||||| ||| ||||| ||||| || || || ||||| ||||||||| Sbjct 299643 ATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCGGGCGGTGTTGTTG 299584 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTC 23590 || || | |||||||| || || || ||||| |||| ||| || | ||| Sbjct 299583 TAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCAGCGATGTAGCTC 299524 Query 23591 GAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATC 23650 || | | || | | | || | || || || || | ||||| || || Sbjct 299523 ---CCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATG 299467 Query 23651 ATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACC 23710 | ||||| || ||||| |||||||||||||||||||||||||| || || | |||| | Sbjct 299466 AGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGC 299407 Query 23711 AAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCG 23770 | ||| || |||| ||||| | || |||| ||| || || || |||| Sbjct 299406 AGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCG 299347 Query 23771 TGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCT 23830 || || || | | ||||| || ||||| || || |||||||| |||||||| | | Sbjct 299346 TGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCGTCAATGTCTTTT 299287 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCG 23890 ||||| ||||||| | || | ||| | ||||| || || | |||| || ||| Sbjct 299286 CCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACTTTCCCG 299227 Query 23891 TTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAG 23950 || || || | |||||| || || | || ||||| || ||||| ||| ||| ||| Sbjct 299226 TTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTGTAGGAAAAA 299167 Query 23951 TC 23952 || Sbjct 299166 TC 299165 >seq258 Length=1028905 Score = 116 bits (128), Expect = 3e-21 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 |||||||||||||| || || || ||||| || ||| |||||| || || || ||| || Sbjct 692515 GCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTG 692574 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 ||||||||||||||||||||||||||||| || ||||||||| Sbjct 692575 AAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAG 692616 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 ||||||||||| || || || || ||||| || ||| |||||| || || || ||| || Sbjct 706716 GCGTTCGCCGCAGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTG 706657 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 |||||||||||||||||||| |||||||| || ||||||||| Sbjct 706656 AAGAAACGCGGCCTGATGCCTGGCCTGACCTTCAGCAACGAG 706615 >seq761 Length=414005 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||||||||| || || ||||| ||||| || || |||||||| | || || || Sbjct 275174 CACCTCGTCTTTACTTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGT 275233 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||| | || | ||||| | ||||||||||||||||| || || Sbjct 275234 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGT 275293 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 |||||||| ||||||||| ||||| || ||||| Sbjct 275294 ACCCGTCTCTGTCTGCGACTCAATGATGGCGTACCACA 275331 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || |||||||| | ||||| || | || |||||| || ||||| |||||||||||||| Sbjct 277065 CCAATGCCTCCTGCTGATTTGGAAACCAGCGCGCACTGCTTCAGTGTGTCGTAGATGCCG 277124 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 || |||||||| ||| | | |||| || |||||| Sbjct 277125 TCAATGCTGTCGTCTCTCATAGCGAGCAGGAAACA 277159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445714808111280