Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq656 394 1e-104 >seq656 Length=490082 Score = 394 bits (436), Expect = 1e-104 Identities = 1231/1903 (65%), Gaps = 31/1903 (2%) Strand=Plus/Minus Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429 || || || || || || | ||||| ||||| || | || || || ||||| || || Sbjct 300672 AGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTG 300613 Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489 ||||| || | || | ||||| || || |||| || ||||| || || || || ||| Sbjct 300612 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGC 300553 Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGT 62549 || || |||| || | || || || | |||| | | ||| || || || || | Sbjct 300552 ATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGC 300493 Query 62550 TCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAAT 62602 | ||| | ||| | || | || | | ||| || || || || Sbjct 300492 TTCCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCG-------TACTGGAGGAT 300440 Query 62603 ACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTT 62662 || || ||| | || ||| | || || || || || || || | || |||| Sbjct 300439 GCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTC 300380 Query 62663 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTG 62722 || || ||||| | || |||| || ||||| || ||||| | | || || ||| Sbjct 300379 GCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTG 300320 Query 62723 TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAAC 62782 ||||| ||||| || || || ||| | || || || ||||| || || || || || Sbjct 300319 AGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGAC 300260 Query 62783 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62842 || || ||||| || | || | || || || | || ||||| || | || || || Sbjct 300259 TCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTA 300200 Query 62843 ATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTT 62902 || || || || || || || || || | || || || ||| || ||| || Sbjct 300199 GTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTT 300140 Query 62903 GAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATT 62959 ||| || || ||| || | || ||||||| | || | || ||||| || Sbjct 300139 CTTAAAGTCGAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTT 300080 Query 62960 ACACACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTA 63017 ||| || || ||||| | | | | | || | | ||||| ||||| || || || Sbjct 300079 ACAGACCGCCACCTCGTC--CTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTG 300022 Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077 |||||||| || || | || || || || ||||| |||| || || ||||| ||||| Sbjct 300021 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGC 299962 Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 63137 ||| | || || || ||||| ||||||| || || || || | ||| || ||||| Sbjct 299961 ATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCC 299902 Query 63138 TTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCG 63197 || | | || |||| ||| |||| ||| ||| || | || ||||| Sbjct 299901 TTCACCACCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCC 299842 Query 63198 TCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63257 || ||||| | ||||| | ||||| || | |||||||||| ||||| || | Sbjct 299841 TCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCTGG 299782 Query 63258 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTT 63317 | || ||||| ||||| || || ||||| ||||| | || ||||| ||||| Sbjct 299781 TTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTCTG 299722 Query 63318 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63377 | ||| || ||||| |||||||| ||||| || || || ||||| | | | |||| | Sbjct 299721 GCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACATCAAAG 299662 Query 63378 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63437 |||||||| |||| ||| ||||| | |||| || || ||||| || ||||| || | Sbjct 299661 TGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACA 299602 Query 63438 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63497 || | |||||||| || ||||| | || ||| || | | || || || | || || Sbjct 299601 TAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTA 299542 Query 63498 GTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCT 63557 || || | ||| |||| ||| | | | || || | | | || || || || Sbjct 299541 GTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCA 299482 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || ||| || || | ||||| | || | ||||| |||||||| || ||||| ||| Sbjct 299481 GCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCA 299422 Query 63618 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAAT 63677 || ||||| || || || ||||| |||| || || | || || || || || Sbjct 299421 TCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAG 299362 Query 63678 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63737 | ||| || || ||||| || ||||| || || || || || ||||| |||||||| || Sbjct 299361 AGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCG 299302 Query 63738 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797 | ||| || || | || || || || | || | ||| | ||||||||| || | Sbjct 299301 GCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGC 299242 Query 63798 TCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63857 || | | ||| ||| || |||| || ||||| |||| ||||| || ||||| Sbjct 299241 TCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAG 299182 Query 63858 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTG 63917 ||||||| ||||| |||| || ||||| || |||||||| || || | | Sbjct 299181 AAGTTGTAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGAGGCGGTCTTTGTTCTCC 299122 Query 63918 TTAACTATATCCATGGTAATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTT----AG 63972 ||| || || | ||| | |||| | || || || || || ||||| | || Sbjct 299121 AGAACGATGTCGAGGGTC-TGCTTGGAGATCATGGGGGAGTGG----CATTTGTTCAGAG 299067 Query 63973 GATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGT 64032 | || || |||||| | | || ||||||||||| || |||| ||| || || ||||||| Sbjct 299066 GGTTGACGTAGTTGTACAGGTCTTCCATCACTTCGCTGAATACTTTCTTGGTCTCCTTGT 299007 Query 64033 GTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTAC 64092 | || || || | ||| || |||||||| || ||||| || ||||| || | || || Sbjct 299006 GAAGGTTGGAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCCGGGTGCTTGGTCGTCA 298947 Query 64093 AAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATA 64152 ||||| || || || ||||| || ||||| | || || || || || || | || | Sbjct 298946 GGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACA 298887 Query 64153 TTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCAT 64212 || || || |||||||| | || | ||||| | || | || | || | Sbjct 298886 AACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCTGCATTCAGACCGT 298827 Query 64213 AGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255 |||| | || ||||| || ||||||||||| |||||||| Sbjct 298826 AGCAGAGCTTCTGGATACGGGAGGTGATTTTATCGAACATGAC 298784 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || ||||| || | || ||||| || ||||| | Sbjct 301015 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTCCCGTAGTTGGGCTCTGCGATGTGGATGT 300956 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || || ||||| ||| |||| || | |||||||||||| |||| | |||| Sbjct 300955 TCAGAGACTGGCTCTGATCTATGTAGGCGCCACGGTCTGCAGCCATCTTTAGCACAGTCT 300896 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 |||| | ||| ||||||| |||||||||| |||| | ||| ||||||| Sbjct 300895 TTTGGGAAATCTCCCAAACGGTTTTATAAAGCTGCTTCAGATCGTCTGGAA 300845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629744706485520