Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq656 118 1e-21 seq197 89.7 5e-13 >seq656 Length=490082 Score = 118 bits (130), Expect = 1e-21 Identities = 892/1429 (62%), Gaps = 13/1429 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 ||||| ||||| || | ||| || ||||| || | || || | || || || ||||| Sbjct 300669 AGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTG 300610 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | || |||||||| || || | | || |||| || || || || ||||| Sbjct 300609 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATG 300550 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||| || |||| || ||| | || ||| || || ||| Sbjct 300549 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 300490 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||||| | || || || |||| |||||| || || || || || ||||| || Sbjct 300489 CAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTG 300430 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | || || | | || ||||| ||||| || | || |||||||| || | Sbjct 300429 ACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGGCC 300370 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || ||||| || || || || ||||| || || || || | | || |||||| | Sbjct 300369 TCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTCTGGG 300310 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || ||||| | || | || | || || | || ||||||||||| || ||||| || Sbjct 300309 CTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCG 300250 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 ||||| | || || || || || | ||| || || || || ||||| || Sbjct 300249 ATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGATCTCA 300190 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CA 37660 || || || || || || || || | | || || | || ||| | || | Sbjct 300189 ATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTCG 300130 Query 37661 TAAATACG-TTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 || | || | | | || | | | | | || || | || ||||| || || Sbjct 300129 AAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCC 300070 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 || || || | | | | | | | ||||| || ||||| || || | | || || Sbjct 300069 ACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTG 300010 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 |||| || || ||| || | || || | || || || || || || ||||| Sbjct 300009 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTC 299950 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGATC-G 37897 || ||| | |||| |||||| || | | ||| || || || || || || | | Sbjct 299949 CCGGTTTCCGTCTGAGACTCGATGATGGCGTACCA-AACCTGCTGAGCCTTCACCACCTT 299891 Query 37898 CTTTA-AtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCAT 37956 ||| | | ||| | |||| |||| | || | || | ||| || | |||||| Sbjct 299890 CTTCACCCTCCCTTCCT--TTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAG 299833 Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 ||| | || ||||| ||| |||||||| || ||||| || | | | || Sbjct 299832 CACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCC 299773 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATA 38075 || | | ||| || | ||||| | ||| ||| ||| |||| ||| ||| ||| | Sbjct 299772 ACTCTCTTCATGAACAGGTCAGGGATCCA-CATGGCGTAGAATAGGTCTCTGGCTCTCTG 299714 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATG 38134 || || || ||| ||| ||||| |||| || || ||||| | |||| |||||| | Sbjct 299713 CTCCTCCTTTCCTGTGTTC-TTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCACG 299655 Query 38135 GTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAA 38194 | || | || || | | ||||| |||| || | || ||||| | || ||| | Sbjct 299654 GCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCGGG 299595 Query 38195 CTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGG 38254 | ||||| || || | | | ||| || || | ||||| || |||||||| | || | Sbjct 299594 CGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCAG 299535 Query 38255 ATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTT 38314 || || | || | | || || || | || || || || || || || || Sbjct 299534 CGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATT 299475 Query 38315 TTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTA 38374 | || || | ||||| || || | || || | || || || || ||||||||||| | Sbjct 299474 TGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCA 299415 Query 38375 TTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAG 38434 | | || | || || || |||| || | | || |||||||| || | || | Sbjct 299414 TGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAGAGGGTTG 299355 Query 38435 GAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTA 38494 | || || || ||||||| || ||||||| || || || || || | | || | Sbjct 299354 GCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCGTCAA 299295 Query 38495 TATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 | || ||||| ||||| | || |||||||| ||||| || || || Sbjct 299294 TGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGG 299246 >seq197 Length=1194064 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || |||||||| || || || | |||||||| | |||| || | Sbjct 1112712 CTTCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATGAGGCCTCTCTTCT 1112653 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| | || ||||||||||| || || ||||| || ||||| ||||||||||| | Sbjct 1112652 TTAGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAG 1112593 Query 11772 CTAC 11775 | || Sbjct 1112592 CCAC 1112589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468470574110960