Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq656 410 2e-109 >seq656 Length=490082 Score = 410 bits (454), Expect = 2e-109 Identities = 1277/1974 (65%), Gaps = 21/1974 (1%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 |||||||||||| | || || | | ||||| ||||| || ||||| | | Sbjct 300748 CTGAATGGATCCGTTGTTGGCGATCAGTTTGTTCTTCATCTCCTCGTTCCACAGCCCCCG 300689 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | | | || || || ||||| || | || || ||||| || | || || Sbjct 300688 CTCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCT 300629 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| || | || | ||||| || || |||| || ||||| Sbjct 300628 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGC 300569 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 300568 GGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 300509 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | ||| | || | || Sbjct 300508 CTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTA 300449 Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 || || || || || ||| | || ||| | || || ||||| || || || | Sbjct 300448 CTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGC 300389 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 || ||||| || || ||||| | || |||| || ||||| |||||||| | | || Sbjct 300388 CGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTT 300329 Query 65507 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 65566 || ||| ||||| |||| || || || ||| | || || || |||||||| || Sbjct 300328 GAGCAGTTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAA 300269 Query 65567 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 65626 || || || || || ||||| || | || | || || || | || ||||| || | Sbjct 300268 ACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTAC 300209 Query 65627 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 65686 || || || || || || || || || || || || | || || || ||| || Sbjct 300208 GGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGA 300149 Query 65687 CTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAGA 65743 ||| || ||| || || |||||| | || ||||||| | || | || Sbjct 300148 GGCCAGCTTCTTAAAGTCGAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGA 300089 Query 65744 TGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAA 65801 ||||| ||||| || || ||||| | | | | | || | | ||||| ||||| Sbjct 300088 GGCCAGGTTACAGACCGCCACCTCGTC--CTTGCTGGTGTACTCCACGATCTCCGTGCAG 300031 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 || || || ||||||||||| || | || || || || ||||| |||| || || ||| Sbjct 300030 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCC 299971 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 || ||||| ||| | || || || ||||| ||||||| || || || || | ||| || Sbjct 299970 TTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACC 299911 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT--AGTGTATACAATC 65979 ||||||| | | || ||| ||| |||| ||| |||||| | || Sbjct 299910 TGCTGAGCCTTCACCACCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTC 299851 Query 65980 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 66039 || ||||| || ||||| | ||||| || ||||| || | |||||||||| | Sbjct 299850 --TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGG 299793 Query 66040 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 66099 |||| || || || ||||| ||||| || || ||||| ||||| | || | Sbjct 299792 ACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGA 299733 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 ||| ||||||| ||| || ||||| |||||||| ||||| || || || ||||| | | Sbjct 299732 ATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGA 299673 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 | |||| | |||||||| |||| ||| ||||| | |||| || || ||||| || | Sbjct 299672 ACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCAC 299613 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279 |||| || | || | |||||||| || ||||| | || ||| || | | ||||||| Sbjct 299612 CCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGG 299553 Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGAC 66339 | | || || || || | ||| ||||| ||| | | | || || | | | | Sbjct 299552 AGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGC 299493 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 | || || || || ||| || || | ||||| | || | || || |||||||||| Sbjct 299492 CGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCT 299433 Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 66459 | || || |||||| ||||| || || || ||||| |||| || || | || | Sbjct 299432 CGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCC 299373 Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 66519 | || || || | ||| || || ||||| || ||||| || || || || || ||||| | Sbjct 299372 CGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGG 299313 Query 66520 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 66579 ||||||| || | ||| || || | || || || || | || | ||| | ||||| Sbjct 299312 TCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGT 299253 Query 66580 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 66639 |||| || | || | | || ||| || |||| || ||||| |||| |||| Sbjct 299252 GCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTT 299193 Query 66640 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT 66699 | || ||||| ||||||| ||||| |||| || ||||| || || ||||| | Sbjct 299192 TGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGAGGCGGT 299133 Query 66700 CCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCA 66758 | || | | ||| | || | ||| | ||| || || || || || || || Sbjct 299132 CTTTGTTCTCCAGAACGATGTCGAGGGT-CTGCTTGGAGATCATGGGGGAGTG----GCA 299078 Query 66759 TTTTT----AGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 66814 ||| | ||| ||||| |||||| | | || ||||||||||| || |||| ||| || Sbjct 299077 TTTGTTCAGAGGGTTGACGTAGTTGTACAGGTCTTCCATCACTTCGCTGAATACTTTCTT 299018 Query 66815 tGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 || || ||||| || || || ||||| || || ||||| | ||||| || ||||| || Sbjct 299017 GGTCTCCTTGTGAAGGTTGGAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCCGGGTG 298958 Query 66875 TTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 66934 | || || ||||| || || || ||||| || ||||| | || || || || || Sbjct 298957 CTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGTGAC 298898 Query 66935 TCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 66994 || | || | || ||||| |||||||| | || | ||||| | || | Sbjct 298897 GCCGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCTGC 298838 Query 66995 GTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 67048 || | || || || | || ||||| || ||||||||||| |||||||| Sbjct 298837 ATTCAGACCGTAGCAGAGCTTCTGGATACGGGAGGTGATTTTATCGAACATGAC 298784 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || ||||| || | || ||||| || ||||| | Sbjct 301015 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTCCCGTAGTTGGGCTCTGCGATGTGGATGT 300956 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || || ||||| ||| |||| || | |||||||||||| |||| | |||| Sbjct 300955 TCAGAGACTGGCTCTGATCTATGTAGGCGCCACGGTCTGCAGCCATCTTTAGCACAGTCT 300896 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 |||| | ||| ||||||| |||||||||| |||| | ||| ||||||| Sbjct 300895 TTTGGGAAATCTCCCAAACGGTTTTATAAAGCTGCTTCAGATCGTCTGGAA 300845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658096624725560