Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1203 111 1e-19 seq155 111 1e-19 >seq1203 Length=218618 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 21003 TGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCC 21062 || ||||||| || || || ||||| |||||||||||||| || || ||||| || ||| Sbjct 2105 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 2046 Query 21063 ATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGA 21122 |||||||| || | |||||||||||| || |||||||| || | || || ||||| Sbjct 2045 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1986 Query 21123 CACAAAACGTGACAAGGAGGGAGAGCCAT 21151 || | |||| || || || |||||||| Sbjct 1985 CAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1957 >seq155 Length=1349651 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 21003 TGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCC 21062 || ||||||| || || || ||||| |||||||||||||| || || ||||| || ||| Sbjct 1338972 TGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCC 1338913 Query 21063 ATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGA 21122 |||||||| || | |||||||||||| || |||||||| || | || || ||||| Sbjct 1338912 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGG 1338853 Query 21123 CACAAAACGTGACAAGGAGGGAGAGCCAT 21151 || | |||| || || || |||||||| Sbjct 1338852 CAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1338824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427727728018320