Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1897 127 1e-24 seq432 127 1e-24 >seq1897 Length=71952 Score = 127 bits (140), Expect = 1e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 91798 TCATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACA 91857 |||||||| ||| ||| ||||||||||| || | | |||| ||||| | | | Sbjct 2098 TCATTTCCGCACCTTCACCTCCAAAGAGGACTGCAGCCTAATCACAGACACAGCTACCAA 2157 Query 91858 ACTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || |||||||||||||| || | || || |||||||| ||| | ||||| Sbjct 2158 GCTCGAGCGCAGCGGCTTCTACTGGGGCCCACTTGGAGTAGAGGAGGCCCATTGCATGCT 2217 Query 91918 GCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTT 91977 |||||| | | |||||||| || ||||| || || || | || ||||||||||| || Sbjct 2218 CCGCAACGCCCCCCTGGGCAGTTTCCTCATCCGCGACAGTCGACAGAAGGACGTCTTCTT 2277 Query 91978 CACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 || ||||| || ||| || ||||| ||||| ||| | || || |||||| Sbjct 2278 TACTCTGTCCTACCACGACAAGAAGGGACCGGTCAGCGTGCGCATCGACTACAAG 2332 >seq432 Length=738899 Score = 127 bits (140), Expect = 1e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 91798 TCATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACA 91857 |||||||| ||| ||| ||||||||||| || | | |||| ||||| | | | Sbjct 731718 TCATTTCCGCACCTTCACCTCCAAAGAGGACTGCAGCCTAATCACAGACACAGCTACCAA 731777 Query 91858 ACTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || |||||||||||||| || | || || |||||||| ||| | ||||| Sbjct 731778 GCTCGAGCGCAGCGGCTTCTACTGGGGCCCACTTGGAGTAGAGGAGGCCCATTGCATGCT 731837 Query 91918 GCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTT 91977 |||||| | | |||||||| || ||||| || || || | || ||||||||||| || Sbjct 731838 CCGCAACGCCCCCCTGGGCAGTTTCCTCATCCGCGACAGTCGACAGAAGGACGTCTTCTT 731897 Query 91978 CACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 || ||||| || ||| || ||||| ||||| ||| | || || |||||| Sbjct 731898 TACTCTGTCCTACCACGACAAGAAGGGACCGGTCAGCGTGCGCATCGACTACAAG 731952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356193401153377