Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq351 86.0 6e-12 >seq351 Length=862037 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || | | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 703949 TGGCCACCCCTGAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 703890 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| ||||| ||||| || |||||| ||||||| | ||||| || || Sbjct 703889 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 703830 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || || || ||| || || | | || | |||||| | |||||| Sbjct 703829 GGGATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCC 703770 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||| | ||||| ||||| | || || || || || ||||| Sbjct 703769 ACCTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCAT 703720 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || || ||||||| | ||||| || || || ||||| || || Sbjct 686702 TCTTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 686643 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | |||||| ||||||||||||| | ||| | Sbjct 686642 TCTTGGATCTTAGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 686583 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | ||||| ||||| || ||||| Sbjct 686582 GTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 686548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496006586792800