Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq656 455 5e-123 seq761 102 1e-16 seq258 102 1e-16 >seq656 Length=490082 Score = 455 bits (504), Expect = 5e-123 Identities = 1297/1979 (66%), Gaps = 31/1979 (2%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 |||||||||||| | || || | | ||||| ||||| || ||||| | | Sbjct 300748 CTGAATGGATCCGTTGTTGGCGATCAGTTTGTTCTTCATCTCCTCGTTCCACAGCCCCCG 300689 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | | | || || || ||||| || | || || ||||| || | || || Sbjct 300688 CTCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCT 300629 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || ||||| Sbjct 300628 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGC 300569 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || ||||| ||||| || |||| || | || || || | |||| | ||| Sbjct 300568 GGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 300509 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCA 79263 || || || || || |||| | ||||| | || | || | | | | ||| | || Sbjct 300508 CTTCTCCTTCAGCAGCTTCC-AGTCCCACATGTCGGTGGGAGTCTTC-TCCCACATGTCG 300451 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 || || || || || || || | ||| ||| ||| || || ||||| || || | Sbjct 300450 TACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCT 300391 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 | || | ||| || || ||||| | || |||| || ||||| ||||| || | | Sbjct 300390 GCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATG 300331 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 ||||| ||| |||||| |||| || || || ||| | || || || |||||||| Sbjct 300330 TTGAGCAGTTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCC 300271 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 || || || || || || ||||| || | || | || || || | || ||||| || Sbjct 300270 AAACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGT 300211 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTG---ACC 79560 | || || || || || || || || || || || ||| | || || || ||| ||| Sbjct 300210 ACGGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACC 300151 Query 79561 ACATCCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACGCG 79617 || || || ||| || || || || | || ||||||| | ||| Sbjct 300150 GAGGCC---AGCTTCTTAAAGTCGAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCG 300094 Query 79618 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATTTCAG 79675 | || ||||| ||||| || || ||||| | | | | | || | | || || | Sbjct 300093 ATGGAGGCCAGGTTACAGACCGCCACCTCGTC--CTTGCTGGTGTACTCCACGATCTCCG 300036 Query 79676 TGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 79735 |||||||||| || ||||| ||||| || | || || || || ||||| |||| || | Sbjct 300035 TGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGG 299976 Query 79736 CATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 79795 | ||||| ||||| ||| | || || || ||||| ||||||| || || || || | || Sbjct 299975 CGTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACC 299916 Query 79796 AGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATT--GTGTATA 79853 | || ||||||| | | ||| ||| ||| |||| |||| ||||| | Sbjct 299915 AAACCTGCTGAGCCTTCACCACCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGA 299856 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 || || ||||| || ||||| ||||| | || ||||| |||| |||||||| Sbjct 299855 GCTTC--TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACAT 299798 Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 || ||||| || | || |||| ||||| || || ||||| ||||| | || Sbjct 299797 CAGGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGC 299738 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 ||||| ||||||| ||| |||||||| |||||||| ||||| || || || ||||| Sbjct 299737 GTAGAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 299678 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | |||| | |||||||| |||| ||| ||||| | |||||||||| ||||| Sbjct 299677 GTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTT 299618 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || ||||| || | || | |||||||| || ||||| | || ||| || | | || Sbjct 299617 GCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCC 299558 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| | || || || || | ||| ||||| ||| | | | || || | | Sbjct 299557 ATTGGAGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGC 299498 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || || || || || ||| || || | ||||| | || | || || ||||| Sbjct 299497 CACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGAT 299438 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 |||||| ||||| ||||| ||||| || || || ||||| |||| || || | Sbjct 299437 GCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTT 299378 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || || || || | ||| || || ||||| || ||||| || || ||||| || || Sbjct 299377 GGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTT 299318 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| |||||||| || | || || || | || || || |||| || | ||| | Sbjct 299317 GTAGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAG 299258 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| || | || | | || || || |||| || || || |||| Sbjct 299257 CATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAG 299198 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||||| || ||||| ||||||| ||||| |||| || ||||| || || ||||| Sbjct 299197 GGTTTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGAG 299138 Query 80574 TTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAATGTT 80632 || || | | ||| | || | ||| | ||| || || || || || || Sbjct 299137 GCGGTCTTTGTTCTCCAGAACGATGTCGAGGGT-CTGCTTGGAGATCATGGGGGAGTG-- 299081 Query 80633 TCCCATTTTT----AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 80688 ||||| | ||| || || |||||| | | || ||||||||||| || |||| | Sbjct 299080 --GCATTTGTTCAGAGGGTTGACGTAGTTGTACAGGTCTTCCATCACTTCGCTGAATACT 299023 Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || || || |||||||| || || || ||||| || |||||||| | ||||| || || Sbjct 299022 TTCTTGGTCTCCTTGTGAAGGTTGGAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCC 298963 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 || || | || || ||||| || || || ||||| || ||||| | || || || Sbjct 298962 GGGTGCTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTG 298903 Query 80809 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 80868 || || || | || | || ||||| |||||||| | || | ||||| | Sbjct 298902 GTGACGCCGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAG 298843 Query 80869 TCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 || | || | || || || | || ||||| || ||||||||||| |||||||| Sbjct 298842 TCTGCATTCAGACCGTAGCAGAGCTTCTGGATACGGGAGGTGATTTTATCGAACATGAC 298784 Score = 123 bits (136), Expect = 4e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || ||||| || | || ||||| || ||||| | Sbjct 301015 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTCCCGTAGTTGGGCTCTGCGATGTGGATGT 300956 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || || ||||| ||| |||| || | |||||||||||| |||| | |||| Sbjct 300955 TCAGAGACTGGCTCTGATCTATGTAGGCGCCACGGTCTGCAGCCATCTTTAGCACAGTCT 300896 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 |||| | ||| ||||||| |||||||||| |||| | ||| ||||||| Sbjct 300895 TTTGGGAAATCTCCCAAACGGTTTTATAAAGCTGCTTCAGATCGTCTGGAA 300845 >seq761 Length=414005 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 ||||||||||||| ||||| || | |||||| || | || || || || || || | Sbjct 272664 TCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCGATGTGAATGT 272723 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| ||||| ||||||||| | | || | ||||| ||||| || | || |||| Sbjct 272724 TGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGACAGTCT 272783 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | |||||||||| |||||||| | |||||||||| ||||| Sbjct 272784 TCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAATATCATCTGG 272832 >seq258 Length=1028905 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||| || || || |||||||| ||||| || || | Sbjct 692635 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 692576 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| ||||| || ||||| ||||||||||| || || ||||| || | Sbjct 692575 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 692516 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 692515 CCACCACACGCTCTCC 692500 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||| || || || || ||||| ||||| || || | Sbjct 706596 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCAGGCATCAGGCCGCGTTTCT 706655 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| ||||| || ||||| ||||||||||| || |||||||| || | Sbjct 706656 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACTGCGGCGAACG 706715 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 706716 CCACCACACGCTCTCC 706731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718185669364760