Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq656 428 6e-115 >seq656 Length=490082 Score = 428 bits (474), Expect = 6e-115 Identities = 1107/1672 (66%), Gaps = 31/1672 (2%) Strand=Plus/Minus Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 ||| ||| | || || ||||| || || | | | || ||||| || || ||||| | Sbjct 300424 TGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGGCCTCCAG 300365 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATC 71492 || | || || ||||| ||||| || | | ||||| ||| ||||| ||||| || Sbjct 300364 GGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTCTGGGCTTTC 300305 Query 71493 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 || || ||| | || || || |||||||| || || || || || || ||||| || Sbjct 300304 GAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCGATGGG 300245 Query 71553 TCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 71612 | ||| | || || || | || ||||| || | || || || || || || || || Sbjct 300244 CCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGATCTCAATGAT 300185 Query 71613 TTTATTGAGATTTCTGACTATTACTTTG---ACCACATCCTTTAGTTTGAGAAAATCAAA 71669 || || || || | || || || ||| ||| || || || ||| || || Sbjct 300184 CTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCC---AGCTTCTTAAAGTCGAA 300128 Query 71670 TCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTAC 71726 ||| || | || ||| ||| | ||| | || ||||| ||||| || || || Sbjct 300127 AGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCAC 300068 Query 71727 CTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTT 71784 ||| | | || || || | | || || ||||| || || || ||||||||||| Sbjct 300067 CTCGTCCTTGCT--GGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTG 300010 Query 71785 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTA 71844 || | || || || || ||||| |||| || || ||||| ||||| || | || || Sbjct 300009 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTC 299950 Query 71845 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTC 71904 || ||||| ||||||| || || || || | ||| || ||||||| | | ||| Sbjct 299949 CCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCTTCACCACCTTC 299890 Query 71905 TTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAATCGTTCGAACTCGTCTCCCCAAG 71962 || ||| ||| |||| |||| ||||| | || || ||||| || ||||| | Sbjct 299889 TTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTC--TCAAACTCCTCCCCCCA-G 299833 Query 71963 CATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC-TCCATCATCATT 72020 || | ||| | || ||||| || || |||||||||| ||||| || | | || | Sbjct 299832 CACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCTC-TC 299774 Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 |||| ||||| || || ||||| ||||| | || ||||| ||||||| ||| || Sbjct 299773 CACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTCTG 299714 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 |||||| |||||||| ||||| || || || ||||| | | | |||| | |||||||| Sbjct 299713 CTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCACGG 299654 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 |||| ||| ||||| | ||||||| || ||||| || ||||| || | || | || Sbjct 299653 CTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCGGGC 299594 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 |||||| || ||||| | || ||| || | | |||||||| || || || || | Sbjct 299593 GGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCAGC 299534 Query 72261 GATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTT 72320 ||| ||||| ||| | | | || ||| | | | || || || || || ||| Sbjct 299533 GATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTT 299474 Query 72321 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 || || | ||||| | || | || || ||||||||||| || || |||||| |||| Sbjct 299473 GGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCAT 299414 Query 72381 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 72440 | || || || ||||| |||| || || | || || || || || | ||| || Sbjct 299413 GGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAGAGGGTTGG 299354 Query 72441 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT 72500 || ||||| || ||||| || || ||||| || ||||| |||||||| || | || || Sbjct 299353 CGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCGTCAAT 299294 Query 72501 ATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGAT 72560 || | || || || |||| || | ||| | ||| ||||| || | || | | Sbjct 299293 GTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCAC 299234 Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 || || || |||| || ||||| |||| ||||| || ||||| ||||||| Sbjct 299233 TTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTGTA 299174 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTAT 72680 ||||| |||| || ||||| || |||||||| || || | | ||| || Sbjct 299173 GGAAAAATCTCTGTCATAAATGATGGAGGAATTGAGGCGGTCTTTGTTCTCCAGAACGAT 299114 Query 72681 ATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTT----AGGATTAACA 72735 || | ||| | ||| || || || || || || ||||| | ||| || || Sbjct 299113 GTCGAGGGT-CTGCTTGGAGATCATGGGGGAGTG----GCATTTGTTCAGAGGGTTGACG 299059 Query 72736 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 72795 |||||| | | || ||||||||||| || |||| ||| || || |||||||| || || Sbjct 299058 TAGTTGTACAGGTCTTCCATCACTTCGCTGAATACTTTCTTGGTCTCCTTGTGAAGGTTG 298999 Query 72796 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCT 72855 || ||||| || |||||||| || ||||| || || || || | || || ||||| Sbjct 298998 GAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCCGGGTGCTTGGTCGTCAGGGTGGCC 298939 Query 72856 GCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGG 72915 || || || ||||| || ||||| | || || || || || || | || | || ||| Sbjct 298938 GCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGG 298879 Query 72916 ATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAAT 72975 || |||||||| | || | ||||| | || | || | || || || | Sbjct 298878 ATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCTGCATTCAGACCGTAGCAGAGC 298819 Query 72976 TTTCTAATACGAGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCAT 73027 || ||||| || ||||||||||| ||||| || ||| ||| ||||| Sbjct 298818 TTCTGGATACGGGAGGTGATTTTATCGAACATGACGCGCTCCTGGCGTCCAT 298767 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || ||||| ||| | || || || ||||| || | Sbjct 301015 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTCCCGTAGTTGGGCTCTGCGATGTGGATGT 300956 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || ||||| ||| |||| || | |||||||||||| |||| | |||| Sbjct 300955 TCAGAGACTGGCTCTGATCTATGTAGGCGCCACGGTCTGCAGCCATCTTTAGCACAGTCT 300896 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 |||| | ||| ||||||| |||||||||| |||| | ||| ||||||| Sbjct 300895 TTTGGGAAATCTCCCAAACGGTTTTATAAAGCTGCTTCAGATCGTCTGGAA 300845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671061524026840