Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq656 114 2e-20 seq258 105 1e-17 seq761 86.0 9e-12 seq197 86.0 9e-12 >seq656 Length=490082 Score = 114 bits (126), Expect = 2e-20 Identities = 359/551 (65%), Gaps = 24/551 (4%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| ||| || || || ||||| | | ||||| | | || Sbjct 299540 ACTAACGGCAACTCCAATGGGCTGGTCCCGATGCTGCGGGTTTACAACAACACCGCCCGC 299599 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || ||| ||||| ||||| || || || || || | ||| | ||| |||| || ||| Sbjct 299600 TATGTTGACCAGGGTGGCAACAAGCGACCGGGAGCCTTCGCCATGTACCTGGAGCCGTGG 299659 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| || || || ||||| | ||| || || ||| | || || ||| || Sbjct 299660 CACTTTGATGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGA 299719 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||| ||| | || || || | ||| | || || ||||||||||| | || | Sbjct 299720 GCCAGAGACCTATTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGAGTGGAGAGC 299779 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| ||| ||||| ||| || || ||||| ||| ||| ||| Sbjct 299780 AACCAGG------ACTGGTCCCTGATGTGTCCCAACGAGTGTCCCGGGCTGGACGAGTGC 299833 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTG 97157 ||||| || ||||||||| ||| ||||| || || | || || || ||| Sbjct 299834 TGGGGGGAGGAGTTTGAG---AAGCTCTACACTAAATATGAAAAGGAAGG--GA-GGGTG 299887 Query 97158 -AGACG--AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACT 97214 ||| | || | || | | | ||| | |||||| | | ||||| || || Sbjct 299888 AAGAAGGTGGTGAAGGCTCAGCAGGTTTGGTACGCCATCATCGAGTCTCAGACGGAAACC 299947 Query 97215 GGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTG 97274 || || || ||||| || |||||||| || || | || |||||||| | || || Sbjct 299948 GGGACGCCCTACATGCTTTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTG 300007 Query 97275 GGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||||||||||| || ||| || |||||||| || || |||||| || ||||||| Sbjct 300008 GGCACCATCAAGTGCAGCAACCTCTGCACGGAGATCGTGGAGTACACCAGCAAGGACGAG 300067 Query 97335 ACGGCAGTTTG 97345 ||| || || Sbjct 300068 GTGGCGGTCTG 300078 >seq258 Length=1028905 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| ||||| |||||||| || || ||||| |||||||| | Sbjct 692510 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 692569 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 |||| ||||| ||||| || |||||||| ||||| ||| |||||| | || ||| Sbjct 692570 GGCTGAAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGAG 692629 Query 125548 ACGAGG 125553 |||||| Sbjct 692630 ACGAGG 692635 >seq761 Length=414005 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 |||||||| | |||||| | | | ||| |||||| || ||||| ||||| ||||||| Sbjct 275334 AACTGTGGTACGCCATCATTGAGTCGCAGACAGAGACGGGTACTCCCTACATGCTCTACA 275275 Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296 |||| || || | || | |||||| | | ||||||||||||| | ||||| Sbjct 275274 AGGACGCCTGCAACAGGAAGACCAACCAGCAAAATCTGGGCACCATCAAATCCAGCAATC 275215 Query 97297 TGTGCACGGAAATTGTAGAGTA 97318 ||||||| ||||| ||||| || Sbjct 275214 TGTGCACAGAAATAGTAGAATA 275193 >seq197 Length=1194064 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 125425 GACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCT 125484 |||||||||| || || || |||||||| |||||||| || || ||||| ||||||| Sbjct 1112584 GACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATTTGCTGCCATCT 1112643 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||| |||||| | || ||||||||||| || || Sbjct 1112644 ACTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTTAC 1112680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740973431660840