Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq351 132 1e-25 seq739 84.2 5e-11 >seq351 Length=862037 Score = 132 bits (146), Expect = 1e-25 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || ||||| || || || |||||||| || ||||| || || || || Sbjct 686705 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 686646 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || ||||| || || |||||||| | ||| ||||| || || ||||| || || Sbjct 686645 TTATCTTGGATCTTAGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 686586 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || ||||| ||||| || ||||| || || ||||||||||||| Sbjct 686585 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATTTTGT 686543 >seq739 Length=426611 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 ||||||||||| ||||| ||||| | || | ||| ||||| |||| || || || | Sbjct 60093 TGGTGGTATTACATCTCCAAAGGTGTGGAGTTCCTGGATACAGTCTTTTTTATACTGAGG 60152 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT--TACTT 78611 ||||| || || ||| | || || || || || || ||||| | ||| ||||| | || Sbjct 60153 AAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTGTACCATGTTCATCCTC 60212 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 ||| ||||| ||||| || ||| || | || ||||| Sbjct 60213 TGG--TGGATCGGTATCAAGTGGGTCCCTGGTGGACA 60247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151261808528372