Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1203 111 1e-19 seq155 111 1e-19 >seq1203 Length=218618 Score = 111 bits (122), Expect = 1e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||| |||||||||| || || | ||||||||||||||| ||||| ||||| ||||| Sbjct 640 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTC 581 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || || | |||||| | || | ||| | | ||| || ||||| || Sbjct 580 CCCCTCCTCTCTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATC 521 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 25944 |||||||||||| |||||||| || ||||| || | ||||| || |||| || Sbjct 520 CCAGATCTTTACTCCCTTCTCCGATAGCTCCTTTGCATTTGTTGATCCCTGTG 468 Score = 100 bits (110), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||||| || || ||||| | |||||| Sbjct 2102 GCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCCATG 2043 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | |||| | |||||| |||||||| || |||||| | || | || || ||||| || Sbjct 2042 T-CGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGGCA 1984 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || ||| || || ||||| ||||| Sbjct 1983 GAGGGCGTGGCAGGGGGGCAGAGCCATAAG 1954 >seq155 Length=1349651 Score = 111 bits (122), Expect = 1e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||| |||||||||| || || | ||||||||||||||| ||||| ||||| ||||| Sbjct 1337507 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTC 1337448 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || || | |||||| | || | ||| | | ||| || ||||| || Sbjct 1337447 CCCCTCCTCTCTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATC 1337388 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 25944 |||||||||||| |||||||| || ||||| || | ||||| || |||| || Sbjct 1337387 CCAGATCTTTACTCCCTTCTCCGATAGCTCCTTTGCATTTGTTGATCCCTGTG 1337335 Score = 100 bits (110), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||||| || || ||||| | |||||| Sbjct 1338969 GCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAGGCACCCCTAGACCCATG 1338910 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | |||| | |||||| |||||||| || |||||| | || | || || ||||| || Sbjct 1338909 T-CGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAGACATAGAACTGGCA 1338851 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || ||| || || ||||| ||||| Sbjct 1338850 GAGGGCGTGGCAGGGGGGCAGAGCCATAAG 1338821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340099217491407