Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq417 93.3 2e-14 seq716 86.0 3e-12 seq605 84.2 1e-11 seq542 84.2 1e-11 seq152 82.4 4e-11 seq86 82.4 4e-11 seq28 82.4 4e-11 >seq417 Length=760141 Score = 93.3 bits (102), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11429 AAATATAG-AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| |||| || || |||||| | |||||||| | |||||||||| ||||||| Sbjct 374252 AAACATAGTAAAAAAAAAAAAACCGCATTGGCCCGTACGGGGATCGAACCCGCGACCTTG 374193 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||| |||||||||||||| |||| Sbjct 374192 GCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 374151 >seq716 Length=436516 Score = 86.0 bits (94), Expect = 3e-12 Identities = 77/97 (79%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||| || ||| ||| ||||||| | |||||||||| ||||||| ||||| Sbjct 37983 AATTAACAAGAAACGAAAAGTTTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTT 37924 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||| |||||||||||||| |||| Sbjct 37923 ATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 37887 >seq605 Length=537948 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 252503 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 252444 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 252443 CTGAGCTAACCGGCC 252429 >seq542 Length=601952 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 524892 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 524833 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 524832 CTGAGCTAACCGGCC 524818 >seq152 Length=1354702 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 164932 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 164991 Query 11528 CC 11529 || Sbjct 164992 CC 164993 >seq86 Length=1669145 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 7712 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 7771 Query 11528 CC 11529 || Sbjct 7772 CC 7773 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 597759 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 597700 Query 11528 CC 11529 || Sbjct 597699 CC 597698 >seq28 Length=2302425 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 583324 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 583383 Query 11528 CC 11529 || Sbjct 583384 CC 583385 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261461692270684