Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq139 158 2e-33 seq747 107 3e-18 seq235 100 4e-16 >seq139 Length=1410976 Score = 158 bits (174), Expect = 2e-33 Identities = 198/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 8705 ACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCT 8764 |||||| | ||||| || ||| | | || | |||||||| | || || || | Sbjct 1333426 ACGTTGTTGCAGACGAGCCTCTGCAGCGAGGCGGTGTTGACGATGTCGAAGCCGACTGCG 1333367 Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || |||||||||||||| |||||||| ||||||||||||| ||| |||| | |||| Sbjct 1333366 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATTGGATTCCCCATCAAGCCT 1333307 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || |||||||||| || | || |||| || ||||||||||| | ||| Sbjct 1333306 TTGAGGGAGAAAGGAGCCCCCATTTCCACCATCGTCTCCCCAAAGATGGCGTTCTGTCGG 1333247 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 ||||||||||||| | || | ||| | |||||| || || | || ||||| || || Sbjct 1333246 GGCTTTTCCACCAGCAGCCCTGGGTAAAGCTCCACGGCGTCAACATCGCCGTACAGCTCC 1333187 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 | | ||| || ||||| || |||||||| Sbjct 1333186 TCCAATATGGCGGCCATTTCTTTGTCTCCTGT 1333155 Score = 132 bits (146), Expect = 7e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9603 GATTGTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTC 9662 |||| | || || |||| |||||| |||| ||||| || ||| ||||||| ||| || Sbjct 1331894 GATTTTCTCACCAATAAGGATGAGCCGAGCCGTCTGGAAGAGTCTTTCGTCATCCCAGTC 1331835 Query 9663 TGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGC 9722 || || || |||| || || ||||||||||||||||| | ||||| || || || Sbjct 1331834 AGGGTGAACTTCCTTCAAAATGTCACACACTCTGTTGTGTTCACGAAGCCAAATGGTGGC 1331775 Query 9723 GTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||||||||||||| || |||||||| |||||||| || || ||||| Sbjct 1331774 GTACATCATGAGACCGGGGACCAGGCCGAAAGCCTCGTGGCCAACAGC 1331727 >seq747 Length=423565 Score = 107 bits (118), Expect = 3e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || ||||| || |||| |||||||| || || || || ||| ||| ||||||| Sbjct 384546 TCACCAATAATAATAAGTCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTTGGATGT 384605 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | |||| | || |||||||||||||||||||||||||||||||| || |||| Sbjct 384606 TCACCCTTCAAGATGTCACACACTCTGTTGTGTTCCCTGAGCCAGATAGTGGCATACAAG 384665 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 | || || || | || || || |||| ||||||| || ||||| Sbjct 384666 GTCAGGCCTGGTATGAGACCGAACACCTCCTGACCGATGGCGAGACG 384712 >seq235 Length=1098308 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| | || || || | || || || |||||||| |||||||| | || || Sbjct 962505 TTTACGATGTCGAAGCCGACTTTGCCTCCAAATGTGCTGGGCTTCCAGTATTCTGGAGAA 962446 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| ||| |||||||||||||||||||||||| |||| || | ||||| Sbjct 962445 CATATGGGGTTTCCCAGGAGGCCTTTGAGGGAAAACGGAGCACCCATTTCCACCATGCTT 962386 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 | || |||||||| || || | ||| |||| || || || | || || || | | Sbjct 962385 TGTCCAAAGATGGCCCCCGGTCGAGTCTTCTCCAGCAGTAACCCAGGATAAAATTCAAGA 962326 Query 8921 GCCTCGATGTCTCCGTAAAG 8940 || || || || || ||||| Sbjct 962325 GCGTCAATATCACCATAAAG 962306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708442797110960