Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq351 104 2e-17 >seq351 Length=862037 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || || ||||| || | ||| || ||| || ||| | ||| ||| Sbjct 703928 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 703869 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | || ||||| || || || || || || || || | Sbjct 703868 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 703809 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTT 94977 || || ||||||||| ||| ||||| || ||| || || |||| |||||||| || Sbjct 703808 ATCTTAGCCTTGACGTTCTCGATGGTGTC-GCTTGGCTCCACCTCAAGGGTGATGGTCTT 703750 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || |||||||||||||||||| || Sbjct 703749 ACCGGTGAGGGTCTTCACAAAGATCTGCATGTTT 703716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448239315897240