Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1683 201 2e-47 seq1936 196 8e-46 seq1535 192 9e-45 seq1256 192 9e-45 seq1050 192 9e-45 seq299 181 2e-41 seq365 176 7e-40 seq608 131 3e-26 seq304 118 2e-22 seq36 113 7e-21 seq1922 93.3 7e-15 seq5469 82.4 1e-11 >seq1683 Length=107015 Score = 201 bits (222), Expect = 2e-47 Identities = 207/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 29266 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 29207 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || |||||||| |||||| |||| || | |||| || |||| Sbjct 29206 CCGCCGTCTGGCTCGCCGCGGTGGAGTTAAGCGTATCTCCGGTCTTATCTACGAGGAGAC 29147 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 29146 CCGCGGTGTGTTGAAGGTCTTCCTGGAGAACGTCATCCGGGACGCCGTCACCTACACCGA 29087 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 29086 GCACGCTAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 29027 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || |||||| ||||| || Sbjct 29026 CCGCACCCTGTACGGCTTTGGAGGTTAAACT 28996 >seq1936 Length=67925 Score = 196 bits (216), Expect = 8e-46 Identities = 206/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 17938 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 17879 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || |||||||||||||| |||| || | |||| || |||| Sbjct 17878 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 17819 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 17818 CCGCGGCGTGTTGAAGGTCTTCCTGGAGAACGTCATCCGGGACGCCGTCACCTACACCGA 17759 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 17758 GCACGCTAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 17699 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || |||||| ||||| || Sbjct 17698 CCGCACCCTGTACGGCTTTGGAGGTTAAACT 17668 >seq1535 Length=133350 Score = 192 bits (212), Expect = 9e-45 Identities = 205/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| ||||||||||| || || || Sbjct 118325 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 118384 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||||||||||||||| |||| || || |||| || |||| Sbjct 118385 CCGCCGTCTGGCCCGCCGTGGTGGAGTCAAGCGGATCTCAGGTCTGATCTACGAGGAGAC 118444 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 118445 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 118504 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 118505 GCACGCTAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 118564 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || |||||| ||||| || Sbjct 118565 CCGCACCCTGTACGGCTTTGGAGGTTAAACT 118595 >seq1256 Length=200427 Score = 192 bits (212), Expect = 9e-45 Identities = 207/274 (76%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 145586 CGCTAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 145527 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| ||| ||||||| ||||||| || |||| || |||| Sbjct 145526 CCGCCGCCTGGCTCGCCGTGGAGGATTCAAGCGCATCTCTGGTCTGATCTACGAGGAGAC 145467 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||| | ||| |||||||| ||||| || ||| ||||| Sbjct 145466 CCGCGGTGTGTTGAAGGTGTTCTTGGAGAACGTTATCCGCGATGCCGTCACCTACACCGA 145407 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || ||||| |||| | || || Sbjct 145406 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTATGCTCTGAAGAGGCAGGG 145347 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || | || ||| ||||| || || Sbjct 145346 CCGCACCCTGTACAGCTTCGGAGGTTAAACTGCT 145313 Score = 188 bits (208), Expect = 1e-43 Identities = 206/274 (75%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 165280 CGCTAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCTGCTAT 165221 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| ||||||||||| |||| || || |||| || |||| Sbjct 165220 CCGCCGCCTGGCTCACCGTGGAGGAGTCAAGCGCATCTCCGGTCTGATCTACGAGGAGAC 165161 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| ||||| | ||| ||||||| ||||| || ||| ||||| Sbjct 165160 CCGCGGTGTGTTGAAGGTCTTCTTGGAGAACGTTATCTGCGATGCCGTCACCTACACCGA 165101 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 165100 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 165041 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || ||| ||||| || || Sbjct 165040 CCGCACCCTGTACGGCTTCGGAGGTTAAACTGCT 165007 >seq1050 Length=272853 Score = 192 bits (212), Expect = 9e-45 Identities = 205/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 27862 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 27921 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || |||||||| ||||| |||| || | |||| || |||| Sbjct 27922 CCGCCGTCTGGCTCGCCGCGGTGGAGTAAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 27981 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 27982 CCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTCATCCGGGACGCCGTCACCTACACCGA 28041 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 28042 GCACGCTAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 28101 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || |||||| ||||| || Sbjct 28102 CCGCACCCTGTACGGCTTTGGAGGTTAAACT 28132 >seq299 Length=950331 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | || || ||||||||||| |||||||| || || || || Sbjct 205276 CGCTAAGCGTCACCGCAAAGTCCTCCGTGATAACATCCAGGGAATCACTAAACCCGCCAT 205335 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||| || |||||||||||||| |||| || | |||| ||||||| Sbjct 205336 CCGCCGTTTGGCTCGCCGCGGTGGAGTCAAGCGCATCTCCGGTCTCATCTACGAAGAGAC 205395 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||| | ||| |||||||| ||| || || ||| ||||| Sbjct 205396 CCGCGGTGTCCTCAAGGTCTTCTTGGAGAACGTTATCCGTGACGCAGTCACCTACACCGA 205455 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| || |||||||| | || ||||| |||| | || || Sbjct 205456 GCACGCTAAGAGGAAGACTGTGACGGCCATGGATGTGGTGTATGCTCTGAAGAGGCAGGG 205515 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 205516 CCGCACTCTCTACGGCTTCGGAGGTTAA 205543 >seq365 Length=832494 Score = 176 bits (194), Expect = 7e-40 Identities = 193/257 (75%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 || ||||| || | | || || ||||| ||||| || |||||||||||||| ||||| Sbjct 123598 AAACGTCACCGTAAAGTCCTCCGTGATAATATCCAGGGGATCACCAAGCCAGCAATCCGC 123657 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||||||||||| ||||| |||||||| || ||||||| | ||||||| |||| || Sbjct 123658 CGTCTGGCTCGCCGTGGAGGAGTCAAACGCATCTCTGGTCTCTTCTATGAGGAGACCCGC 123717 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | |||||||||| |||| || ||| ||| || | |||||| || || ||| ||||| Sbjct 123718 GGTGTTTTGAAGGTCTTTCTGGAGAACGTCATTCGGGATGCTGTCACCTTTACAGAGCAT 123777 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 | || | |||||||||||| |||||||| | || ||||| | || | || ||||| Sbjct 123778 ACAAAGAGGAAGACTGTCACCGCCATGGATGTGGTGTATGCTCTCAAGAGGCAGGGCCGC 123837 Query 16676 AAGATTTATGGTTTTGG 16692 || | ||||| ||||| Sbjct 123838 AAACTGTATGGATTTGG 123854 >seq608 Length=533172 Score = 131 bits (144), Expect = 3e-26 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | || || ||||||||||| || || ||||| || ||||| Sbjct 21579 CGCTAAGCGTCATCGCAAAGTCCTCCGTGATAACATCCAGGGCATTACCAAACCCGCTAT 21638 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||| || ||||||||||||||||| |||| || | |||| || |||| Sbjct 21639 CCGCCGTTTGGCCCGCCGTGGTGGAGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 21698 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 21699 CCGCGGTGTCCTCAAGGTTTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGA 21758 >seq304 Length=939584 Score = 118 bits (130), Expect = 2e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 16505 CGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTG 16564 || ||||||||||||||||| |||| || | |||| || |||| || | ||| || Sbjct 625697 CGCCGTGGTGGAGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGACCCGCGGTGTCCTG 625756 Query 16565 AAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGT 16624 ||| | ||||| ||| ||| |||| |||||| || ||| ||||||||||| || | Sbjct 625757 AAGGTTTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGAGCACGCCAAGAGG 625816 Query 16625 AAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTAT 16684 |||||||| ||| |||||||| | |||||||| | || | || ||||| | | || Sbjct 625817 AAGACTGTGACCGCCATGGATGTGGTCTATGCTCTCAAGAGGCAGGGCCGCACTCTCTAC 625876 Query 16685 GGTTTTGGAAGTTAA 16699 || |||||| | ||| Sbjct 625877 GGCTTTGGAGGATAA 625891 Score = 100 bits (110), Expect = 4e-17 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | || || ||||||||||| || || ||||| || ||||| Sbjct 1323 CGCTAAGCGTCATCGCAAAGTCCTCCGTGATAACATCCAGGGCATTACCAAACCCGCTAT 1264 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 ||| ||| |||| || ||||||||||||||||| Sbjct 1263 CCGCCGTTTGGCCCGCCGTGGTGGAGTCAAGCG 1231 >seq36 Length=2193938 Score = 113 bits (124), Expect = 7e-21 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16503 CTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTT 16562 |||| ||||| || ||||||||| ||||||| | |||| || || | |||| |||| Sbjct 547640 CTCGCCGTGGCGGCGTCAAGCGTATCTCTGGTCTAATCTACGAGGAAACCCGTGGTGTTC 547699 Query 16563 TGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAAC 16622 ||||| | ||| | ||| ||| |||| |||||| || || ||||||||||| || Sbjct 547700 TGAAGGTTTTCTTGGAGAACGTCATCCGTGATGCCGTCACTTACACCGAGCACGCCAAGA 547759 Query 16623 GTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTT 16682 | ||||| || ||| |||||||| | || ||||| |||| | || ||||| | ||| Sbjct 547760 GGAAGACCGTGACCGCCATGGATGTGGTGTATGCCCTGAAGAGGCAGGGCCGCACTCTTT 547819 Query 16683 ATGGTTTTGGAAGTTAA 16699 | || || || ||||| Sbjct 547820 ACGGCTTCGGCGGTTAA 547836 >seq1922 Length=69579 Score = 93.3 bits (102), Expect = 7e-15 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 16539 TCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTT 16598 |||| || |||| || | ||| ||||| | ||||| ||| ||| |||| |||||| Sbjct 58816 TCTACGAGGAGACCCGCGGTGTCCTGAAGGTTTTCCTGGAGAACGTCATCCGTGATGCCG 58875 Query 16599 TCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCAT 16658 || ||| ||||||||||| || | |||||||| ||| |||||||| | |||||||| Sbjct 58876 TCACCTACACCGAGCACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTCTATGCTC 58935 Query 16659 TGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || | || ||||| | | || || || ||| ||||| Sbjct 58936 TCAAGAGGCAGGGCCGCACTCTCTACGGCTTCGGAGGTTAA 58976 >seq5469 Length=1827 Score = 82.4 bits (90), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||||| | |||| || |||||| ||||||||||| || |||| || | | Sbjct 628 AGAACGTTATCCGTAATGCCGTCACCTATACTGAGCACGCTAAGAGT-AGACCGTGATCA 570 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| |||| | || ||||| || | ||||| |||||| ||| Sbjct 569 CCATGGATGTGGTTTATGCTCTGAAGAGGCAGGGCCGCAATCTGTATGGCTTTGGAGGTT 510 Query 16698 AA 16699 || Sbjct 509 AA 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066734431487