Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq656 410 2e-109 seq258 87.8 2e-12 >seq656 Length=490082 Score = 410 bits (454), Expect = 2e-109 Identities = 1277/1974 (65%), Gaps = 21/1974 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 |||||||||||| | || || | | ||||| ||||| || ||||| | | Sbjct 300748 CTGAATGGATCCGTTGTTGGCGATCAGTTTGTTCTTCATCTCCTCGTTCCACAGCCCCCG 300689 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | | | || || || ||||| || | || || ||||| || | || || Sbjct 300688 CTCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCT 300629 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || | || | ||||| || || |||| || ||||| Sbjct 300628 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGC 300569 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 300568 GGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 300509 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| | || | || Sbjct 300508 CTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTA 300449 Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602 || || || || || ||| | || ||| | || || ||||| || || || | Sbjct 300448 CTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGC 300389 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 || ||||| || || ||||| | || |||| || ||||| |||||||| | | || Sbjct 300388 CGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTT 300329 Query 62663 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62722 || ||| ||||| |||| || || || ||| | || || || ||||| || || Sbjct 300328 GAGCAGTTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAA 300269 Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782 || || || || || ||||| || | || | || || || | || ||||| || | Sbjct 300268 ACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTAC 300209 Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62842 || || || || || || || || || || || || | || || || ||| || Sbjct 300208 GGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGA 300149 Query 62843 CTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAAGGCAACAGA 62899 ||| || ||| || || ||| || | || ||||||| | ||| | || Sbjct 300148 GGCCAGCTTCTTAAAGTCGAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGA 300089 Query 62900 TGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAA 62957 ||||| ||||| || || ||||| | | | | | || | | ||||| ||||| Sbjct 300088 GGCCAGGTTACAGACCGCCACCTCGTC--CTTGCTGGTGTACTCCACGATCTCCGTGCAG 300031 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 || || || |||||||| || || | || || || || ||||| |||| || || ||| Sbjct 300030 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCC 299971 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || ||||| ||| | || || || ||||| ||||||| || || || || | ||| || Sbjct 299970 TTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACC 299911 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTAT--AGTGTATACAATC 63135 ||||||| | | || |||| ||| |||| ||| |||||| | || Sbjct 299910 TGCTGAGCCTTCACCACCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTC 299851 Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 63195 || ||||| || ||||| | ||||| || ||||| || | |||||||||| | Sbjct 299850 --TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGG 299793 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 |||| || || || ||||| ||||| || || ||||| ||||| | || | Sbjct 299792 ACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGA 299733 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 |||| ||||||| ||| || ||||| |||||||| ||||| || || || ||||| | | Sbjct 299732 ATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGA 299673 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | |||| | |||||||| |||| ||| ||||| | |||| || || ||||| || | Sbjct 299672 ACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCAC 299613 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 |||| || | || | |||||||| || ||||| | || ||| || | | || || | Sbjct 299612 CCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGG 299553 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63495 | | || || || || | ||| ||||| ||| | | | || || | | | | Sbjct 299552 AGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGC 299493 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 | || || || || ||| || || | ||||| | || | ||||| ||||| |||| Sbjct 299492 CGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCT 299433 Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63615 | ||||| ||||| ||||| || || || ||||| |||| || || | || | Sbjct 299432 CGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCC 299373 Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63675 | || || || | ||| || || ||||| || ||||| || || || || || ||||| | Sbjct 299372 CGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGG 299313 Query 63676 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735 ||||||| || | ||| || || | || || || || | || | ||| | ||||| Sbjct 299312 TCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGT 299253 Query 63736 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63795 |||| || | || | | || ||| || |||| || ||||| |||| |||| Sbjct 299252 GCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTT 299193 Query 63796 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT 63855 | || ||||| ||||||| ||||| |||| || ||||| || || ||||| | Sbjct 299192 TGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGAGGCGGT 299133 Query 63856 CCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATGTTTCCCA 63914 | || | | ||| || || | ||| | |||| | || || || || || || Sbjct 299132 CTTTGTTCTCCAGAACGATGTCGAGGGTC-TGCTTGGAGATCATGGGGGAGTGG----CA 299078 Query 63915 TTTTT----AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 63970 ||| | ||| || || |||||| | | || ||||||||||| || |||| ||| || Sbjct 299077 TTTGTTCAGAGGGTTGACGTAGTTGTACAGGTCTTCCATCACTTCGCTGAATACTTTCTT 299018 Query 63971 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 || |||||||| || || || ||||| || |||||||| || ||||| || ||||| || Sbjct 299017 GGTCTCCTTGTGAAGGTTGGAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCCGGGTG 298958 Query 64031 TTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 64090 | || || ||||| || || || ||||| || ||||| | || || || || || Sbjct 298957 CTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGTGAC 298898 Query 64091 TCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGT 64150 || | || | || || || |||||||| | || | ||||| | || | Sbjct 298897 GCCGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCTGC 298838 Query 64151 GTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204 || | || || || | || ||||| || ||||||||||| |||||||| Sbjct 298837 ATTCAGACCGTAGCAGAGCTTCTGGATACGGGAGGTGATTTTATCGAACATGAC 298784 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || ||||| || | || ||||| || ||||| | Sbjct 301015 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTCCCGTAGTTGGGCTCTGCGATGTGGATGT 300956 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| || || ||||| ||| |||| || | |||||||||||| |||| | |||| Sbjct 300955 TCAGAGACTGGCTCTGATCTATGTAGGCGCCACGGTCTGCAGCCATCTTTAGCACAGTCT 300896 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 |||| | ||| ||||||| |||||||||| |||| | ||| ||||||| Sbjct 300895 TTTGGGAAATCTCCCAAACGGTTTTATAAAGCTGCTTCAGATCGTCTGGAA 300845 >seq258 Length=1028905 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||| || || || |||||||| ||||| || || | Sbjct 692635 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 692576 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| || || || ||||| ||||||||||| || || || || || | Sbjct 692575 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 692516 Query 33446 C 33446 | Sbjct 692515 C 692515 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||| || || || || ||||| ||||| || || | Sbjct 706596 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCAGGCATCAGGCCGCGTTTCT 706655 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| || || || ||||| ||||||||||| || ||||| || || | Sbjct 706656 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACTGCGGCGAACG 706715 Query 33446 C 33446 | Sbjct 706716 C 706716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622875101648440