Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq656 188 2e-42 seq1203 89.7 1e-12 seq155 89.7 1e-12 >seq656 Length=490082 Score = 188 bits (208), Expect = 2e-42 Identities = 574/876 (66%), Gaps = 32/876 (4%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||||||||| ||| | ||| | || | | |||||||| | || |||| Sbjct 299240 GAGCGCCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAAAAGACATTGAC 299299 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCCAAC 363566 ||||| ||||| || || || || || | ||| ||||| |||||| ||||||| Sbjct 299300 GCCGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGG-TTCACCCACGCCTCGCCAAC 299358 Query 363567 AATGTACAATGCTGGAACTCGTAATC---CACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 | | ||| || || || || | | ||| |||| ||||| || || || Sbjct 299359 CCTCTTCAACGCCGGGACC---AACCGGGCGCAGCTGTCCAGCTGCTTCCTGCTCGCCAT 299415 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 |||||| || ||||||||| |||| ||||| || ||| | || || || |||||||| Sbjct 299416 GAAGGATGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAA 299475 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAAC-------AGT 363735 || ||||| || || || || | | |||| |||| | || Sbjct 299476 ATCCGCTGGCGGGATCGGCGTGGCGGTGAGC--------TGCATCAGATCGACTGGGAGC 299527 Query 363736 TACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||| ||| ||||| || |||| ||||||||||| || ||||| || || | | Sbjct 299528 TACAT-CGCTGGCACTAACGGCAACTCCAATGGGCTGGTCCCGATGCTGCGGGTTTACAA 299586 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 ||| || || | || || ||||||||||| ||||| || || || || ||||| Sbjct 299587 CAACACCGCCCGCTATGTTGACCAGGGTGGCAACAAGCGACCGGGAGCCTTCGCCATGTA 299646 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 || ||||| || ||| | || || || || ||||| ||| ||||| ||||| Sbjct 299647 CCTGGAGCCGTGGCACTTTGATGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAA 299706 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||||| | | || | || || ||||| || | ||| | |||||| || ||||| Sbjct 299707 GGAGGAGCAGAGAGCCAGAGACCTATTCTACGCCATGTGGATCCCTGACCTGTTCATGAA 299766 Query 363975 GCGCGTGGAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTT 364033 | | |||||| ||| || | ||||| || | || || |||| ||||| || || Sbjct 299767 GAGAGTGGAGAGCA-ACCAGGACTGGTCCCTGATGTGTCCCAACGAGTGTCCCGGGCTGG 299825 Query 364034 CCGATGTATGGGGTGACGACTAT--GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAA 364091 ||| ||||| || || | | | |||||| || ||| |||||| ||| || | Sbjct 299826 ACGAGTGCTGGGGGGAGGAGTTTGAGAAGCTCTACACTAAA--TATGAAAAGGAAGGGAG 299883 Query 364092 GGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGA 364151 || ||| | || ||| || | |||| |||||||| || || |||| || Sbjct 299884 GGTGAAGAAGGTGGTGAAGGCTCAGCAGGTTTGGTACGCCATCATCGAGTCTCAGACGGA 299943 Query 364152 GACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCA 364211 || || || ||||| ||| | ||||| || | |||||| | ||| |||||||||| | Sbjct 299944 AACCGGGACGCCCTACATGCTTTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAA 300003 Query 364212 CCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 ||| || || || || |||||||| || || ||||| | || |||||| || Sbjct 300004 CCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGATCGTGGAGTACACCAGCAAGGA 300063 Query 364272 CGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 |||| || || |||||||| || || ||||| || Sbjct 300064 CGAGGTGGCGGTCTGTAACCTGGCCTCCATCGCCCT 300099 Score = 96.9 bits (106), Expect = 9e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || |||||||||||||| || || || |||||||| || |||||||||| | |||| | Sbjct 300545 GCCCCCATGCCCACGGCCTCCACCGCTCAGATCCTGGGCAACAACGAGTCCATCGAGGCC 300604 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | ||| |||| || |||||||| || | | | || ||| Sbjct 300605 TACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTCCAGATCGTCAATCCT 300664 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 |||| ||||||| || | || || ||||||||| || ||||||||| | | Sbjct 300665 CACCTTCTCAAGGACCTGACGGAGCGGGGGCTGTGGAACGAGGAGATGAAGAACAAACTG 300724 Query 364930 ATCGCC 364935 |||||| Sbjct 300725 ATCGCC 300730 >seq1203 Length=218618 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/167 (73%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 ||||||||||| || || | | || ||||| || ||||||| || || || ||| Sbjct 479 ACAAATGCAAAGGAGCTATCGGAGAAGGGAGTAAAGATCTGGGATGCCAACGGCTCCCGT 538 Query 111450 GACTTTCTAGATTCAGT-TGGTCTTGTC-GACAACGAAGAAGGTGATCTCGGACCAGTTT 111507 | ||| ||||| ||| ||| ||| | || | || || || || |||||||| || | Sbjct 539 GCCTTCCTAGA--CAGCCTGGGCTTCACAGAGAGAGAGGAGGGGGACCTCGGACCTGTGT 596 Query 111508 ACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 | || || || ||| | |||||||||||||| ||||||| ||||||| Sbjct 597 ATGGGTTCCAGTGGAGGCACTTTGGTGCAGAGTACAAAAACATGCAC 643 >seq155 Length=1349651 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/167 (73%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 ||||||||||| || || | | || ||||| || ||||||| || || || ||| Sbjct 1337346 ACAAATGCAAAGGAGCTATCGGAGAAGGGAGTAAAGATCTGGGATGCCAACGGCTCCCGT 1337405 Query 111450 GACTTTCTAGATTCAGT-TGGTCTTGTC-GACAACGAAGAAGGTGATCTCGGACCAGTTT 111507 | ||| ||||| ||| ||| ||| | || | || || || || |||||||| || | Sbjct 1337406 GCCTTCCTAGA--CAGCCTGGGCTTCACAGAGAGAGAGGAGGGGGACCTCGGACCTGTGT 1337463 Query 111508 ACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 | || || || ||| | |||||||||||||| ||||||| ||||||| Sbjct 1337464 ATGGGTTCCAGTGGAGGCACTTTGGTGCAGAGTACAAAAACATGCAC 1337510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303198981940538