Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq656 262 4e-65 seq761 114 1e-20 seq351 107 2e-18 >seq656 Length=490082 Score = 262 bits (290), Expect = 4e-65 Identities = 977/1512 (65%), Gaps = 46/1512 (3%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 ||||||||| ||| ||||| |||| | || | || || | ||| ||| ||| Sbjct 300662 GATTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 300603 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 || | |||||||| ||||||||||| |||||||| | || ||||||||| |||| Sbjct 300602 CCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATGGGGGCCA 300543 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 || | || | || |||||| || ||| | ||||| ||| ||| |||| Sbjct 300542 GCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCC 300483 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | | || || || ||||||||||||||||| | ||||| | |||| | || Sbjct 300482 ACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTG 300423 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCG--AGCTCGCAACTCGCCTCCAG 145353 ||||| | | |||| ||| || | || || || ||||| || |||||||| Sbjct 300422 AGCCTTCGTACGTCTCGTAAGGACCC--AGCTCTGCCGCCAGTTCGCAGCTGGCCTCCAG 300365 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 ||| || | || || |||||| || || |||||||||| ||||| ||| || Sbjct 300364 GGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTCTGGGCTTTC 300305 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | |||| |||| ||| | || || || || | ||||| | ||| | |||||||| Sbjct 300304 GAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCGATGGG 300245 Query 145474 CCGATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCG 145528 ||| || ||||| ||| | ||| || | ||| | | ||| || Sbjct 300244 CCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTA-GTTGAT----CTCA 300190 Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGT-AATGTGCCGCAACTTTTCAAAGTC 145587 || || || |||| ||| ||| | ||||| || | | | | || ||| | |||||| Sbjct 300189 ATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGC-CAGCTTCTTAAAGTC 300131 Query 145588 AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 || || | ||| || | | |||| |||||| || |||| ||||| || Sbjct 300130 GAA---AGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGAC 300074 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 ||| ||| || | | |||| | |||||||| | ||| | ||||| || ||||| Sbjct 300073 CGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGAT 300014 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||| ||||| || ||||| || || ||||||||||| ||||||||||| |||||||| || Sbjct 300013 GGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGG 299954 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAA--GTCCTGCGCACGCACC 145825 || || ||| ||| | ||| | ||| || ||| | ||| || |||| Sbjct 299953 CGTCCCGGTTTCCGTCTGAGACTCGATGAT--GGCGTACCAAACCTGCTGAGCCTTCACC 299896 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 || || | || || | ||| ||||| ||||||||| ||||||| | || Sbjct 299895 ACCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCC 299836 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 |||| ||| ||| |||||||||| ||||||||||||||| ||||| | |||| Sbjct 299835 CAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCTC 299776 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTT 146003 | || | || ||| |||| || || | ||||| ||||| | | ||| | || || Sbjct 299775 TCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTC 299716 Query 146004 TGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063 ||| ||||| || |||| ||||| | || | | | || ||||| Sbjct 299715 TGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCC 299658 Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGAC 146120 |||| || | || | ||||| |||||| ||| |||||||||||||| || | | Sbjct 299657 ACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGC 299598 Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT-- 146178 | | ||||||| | || |||| ||| || | | || ||| |||||| || Sbjct 299597 GGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGC 299538 Query 146179 -AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237 || | || | | || || | | ||| || |||||||| ||||| Sbjct 299537 CAGCG---ATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAG 299481 Query 146238 CGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC-- 146295 || | ||||| || |||||| | || || ||||||||||| || ||||| || Sbjct 299480 CGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCAT 299421 Query 146296 GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGAG 146353 |||| ||| ||||||| ||||| | ||| ||||||| ||| ||||| || | Sbjct 299420 CCTTC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCC--CGGTTGGTCCCGGCGTTG 299365 Query 146354 AACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGAT 146412 || | || || ||||| || || || || || | || || || || || || Sbjct 299364 AAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCG-ACAGCAGGTTGTAGGTCTCAAT 299306 Query 146413 AGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGG 146472 ||| | | |||||| | || || || || | | || | |||||||||||| || || Sbjct 299305 GGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGG 299246 Query 146473 CCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCC 146532 ||||| ||||||| || ||||| | || |||| | ||||||||||||| | || Sbjct 299245 GCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCC 299186 Query 146533 GAAAAATTTGTA 146544 || || ||||| Sbjct 299185 AAAGAAGTTGTA 299174 >seq761 Length=414005 Score = 114 bits (126), Expect = 1e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 145670 TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTA 145729 |||| ||| || || | ||||| |||||| |||||||||| |||||||||||||| || Sbjct 275193 TATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTG 275252 Query 145730 CTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTC 145789 | ||||||||||| |||||||||||||||||||| || || ||||| ||||| | Sbjct 275253 GTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCCGTCTCTGTCTGCGAC 275312 Query 145790 TCCACGAT 145797 || | ||| Sbjct 275313 TCAATGAT 275320 >seq351 Length=862037 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||| || || | || | ||| |||||||| || |||||||| ||| Sbjct 703947 GCCACCCCTGAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 703888 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 703887 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 703828 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| || ||||| | ||| | || ||| | | ||| | Sbjct 703827 GATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCAC 703768 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| |||||||| || || || || || ||||||||| Sbjct 703767 CTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATG 703719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471958170418560