Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1869 127 1e-24 seq404 118 7e-22 seq2970 109 4e-19 seq2201 109 4e-19 seq1167 109 4e-19 seq2879 104 2e-17 seq367 104 2e-17 seq523 86.0 4e-12 seq154 82.4 5e-11 >seq1869 Length=76927 Score = 127 bits (140), Expect = 1e-24 Identities = 75/78 (96%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 69434 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGG 69493 Query 20007 GGTAATATTTAGCCTTAT 20024 ||| |||||||||||||| Sbjct 69494 GGTGATATTTAGCCTTAT 69511 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| ||| |||||||||||||||||||||||| || |||||||| Sbjct 67211 AAGTCCGTTCCCTTGACTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 67270 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 67271 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 67305 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | | ||||| || ||||||| Sbjct 58754 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGGGTTAGGGACAGTGGGAATCTCGA 58813 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||| || Sbjct 58814 TCATCCATTCATGCGCGTCACTAATTAGATGATGA 58848 >seq404 Length=778216 Score = 118 bits (130), Expect = 7e-22 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| || | ||| || || ||||| || |||||||| ||||||||| ||||||||| Sbjct 257016 CCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATACCAAAAACGAT 257075 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || | |||||| |||||||| ||| | | |||| ||||||| | ||||| || || Sbjct 257076 CGTTACATCGTCAACGGATCCCATGAGGCGAACAAGTTGCAGGATATGCTTGATGGGTTC 257135 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || | || ||||||||||||| || || || ||||| || || || || Sbjct 257136 ATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGACCT 257185 >seq2970 Length=11196 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| ||| | | ||||| || |||||||| Sbjct 11176 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATGGGGGTTAGGGACAGTGGGAATCTCGT 11117 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 11116 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 11082 >seq2201 Length=42710 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| ||| | || ||||| || |||||||| Sbjct 7808 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 7867 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 7868 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 7902 >seq1167 Length=233523 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| |||| |||||||||| |||| ||||| || |||||||| Sbjct 18262 AAGCCCGTTCCCTTGACTGTTTGTTCGCTAGATGGTAGGTAGGGACAGTGGGAATCTCGT 18203 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 18202 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 18168 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 || ||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 15990 CTTTCTTTTCAGAGTGCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGA 15931 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| ||| Sbjct 15930 GGTAATATTTAGCTTTA 15914 >seq2879 Length=12677 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | | ||||| || |||||||| Sbjct 10957 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGGGTTAGGGACAGTGGGAATCTCGT 10898 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || |||||||||||||||||| Sbjct 10897 TCATCCATTCATGTGCATCACTAATTAGATGACGA 10863 >seq367 Length=825777 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | | ||||| || | |||||| Sbjct 38 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGGGTTAGGGACAGTGGGACTCTCGT 97 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||||||||||||| Sbjct 98 TCATCCATTCATGCGCATCACTAATTAGATGACGA 132 >seq523 Length=616072 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||| |||||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct 60557 CTCACTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTATCTACTATCGGTCTCGT 60498 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||| |||||| Sbjct 60497 GCCGGTATTTCGCCTTA 60481 >seq154 Length=1352349 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| || ||||||||| |||| ||||||| ||| | | ||||| || |||||||| Sbjct 9690 AAGACCATTCCCTTGGTTGTGTTTTCGCTGGATGGGGGTTAGGGACAGTGGGAATCTCGT 9749 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| |||||| || |||||||||||||||||| Sbjct 9750 TCTTCCATTCATGAGCATCACTAATTAGATGACGA 9784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334909403197229