Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq656 114 3e-20 seq552 93.3 9e-14 seq288 93.3 9e-14 seq2923 91.5 3e-13 seq1115 91.5 3e-13 seq800 91.5 3e-13 seq542 91.5 3e-13 seq491 91.5 3e-13 seq159 91.5 3e-13 seq120 91.5 3e-13 seq26 91.5 3e-13 seq145 89.7 1e-12 seq895 87.8 4e-12 seq221 87.8 4e-12 seq18 86.0 1e-11 >seq656 Length=490082 Score = 114 bits (126), Expect = 3e-20 Identities = 357/546 (65%), Gaps = 15/546 (3%) Strand=Plus/Minus Query 293706 CAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGG 293765 || |||||| || || | || | ||| || | || |||||| | ||||||| ||||| Sbjct 300271 CAAACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGG 300212 Query 293766 AACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTTCTTCGTGAGAACCTTGACATG 293825 || | || | | |||||| || ||| |||||||||| || |||||| || Sbjct 300211 TACGGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGG--TG 300154 Query 293826 CTTGCGG--AGGTCCTCAAAGTCAAATGCA---TCATTCTTGACATAGTTCTTGAGCACG 293880 | || || | || |||||| || | ||| | |||| || | ||||| || Sbjct 300153 ACCGAGGCCAGCTTCTTAAAGTCGAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCG 300094 Query 293881 ATGCTACCGATGACACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCAGCA 293940 ||| | | | ||| || || ||| ||||| ||||||||| || ||||| | Sbjct 300093 ATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTG 300034 Query 293941 CAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACACTG 294000 |||||||| |||| ||||||||||||| || ||| || |||| ||| | Sbjct 300033 CAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCG 299974 Query 294001 TCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTCCAG 294060 || |||| || | || ||| | || ||||| |||||| || |||| || ||| Sbjct 299973 TCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAA 299914 Query 294061 ACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAAAGC 294120 || | ||||||||||||| ||| || |||| || ||||| || ||||| ||| Sbjct 299913 ACCTGCTGAGCCTTCACCACCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGC 299854 Query 294121 TCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCA-AGTAG 294179 | || | |||| || | || ||| || || ||||||| ||| || | || Sbjct 299853 TTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGT-TGGGACACATCAG 299795 Query 294180 AGACCA---CTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGC 294236 ||||| |||| | ||||||| | ||||||||| || ||| || |||||| || Sbjct 299794 GGACCAGTCCTGG---TTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGC 299738 Query 294237 GTAAAA 294242 ||| || Sbjct 299737 GTAGAA 299732 >seq552 Length=592328 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 64074 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 64015 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 64014 CCCCACGTTGGGCGGA 63999 >seq288 Length=974581 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 555986 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 555927 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 555926 GCCCCACGTTGGGC 555913 >seq2923 Length=11969 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 7840 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 7781 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 7780 CCCCACGTTGGGC 7768 >seq1115 Length=247649 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 120764 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 120705 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 120704 CCCCACGTTGGGC 120692 >seq800 Length=386010 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 363502 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 363443 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 363442 CCCCACGTTGGGC 363430 >seq542 Length=601952 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 491099 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 491040 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 491039 CCCCACGTTGGGC 491027 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 491542 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 491483 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 491482 AGCCCCACGTTGGGC 491468 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 494360 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 494301 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 494300 CCCCACGTTGGGC 494288 >seq491 Length=649005 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 483858 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 483917 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 483918 CCCCACGTTGGGC 483930 >seq159 Length=1331884 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1155231 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1155290 Query 142564 CCCACATCGGGCAGA 142578 ||||| | |||| || Sbjct 1155291 CCCACGTTGGGCGGA 1155305 >seq120 Length=1469128 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 528141 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 528200 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 528201 CCCCACGTTGGGC 528213 >seq26 Length=2447934 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2403259 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2403200 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2403199 CCCCACGTTGGGC 2403187 >seq145 Length=1388073 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 671309 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 671250 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 671249 CCCACGTTGGGC 671238 >seq895 Length=338048 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 228547 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 228605 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 228606 TCGAGTCCCGGCAGAGA 228622 >seq221 Length=1130822 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 142488 ACCGGGTGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGT 142547 ||| ||| || ||| |||||| |||||||||||||||||| ||||||||||||| Sbjct 824440 ACCTGGTAGTCAGA--GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAG 824497 Query 142548 GGTCGTGGGTTCGAGCCCCACATCGGG 142574 |||||||||||| |||||||| | ||| Sbjct 824498 GGTCGTGGGTTCCAGCCCCACGTTGGG 824524 >seq18 Length=2622804 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 757093 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 757034 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 757033 TCCCGGCAGAGA 757022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027714866756819