Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq351 165 2e-35 seq656 109 1e-18 seq258 87.8 3e-12 seq212 87.8 3e-12 >seq351 Length=862037 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || ||||| || || | |||||||| Sbjct 703928 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 703869 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || || || || ||||| || || ||||| ||||| || || Sbjct 703868 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 703809 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| |||||||||||| || || || || | ||||||||| || Sbjct 703808 ATCTTAGCCTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCAAGGGTGATGGTCTTA 703749 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || || |||||||| Sbjct 703748 CCGGTGAGGGTCTTCACAAAGATCTGCAT 703720 >seq656 Length=490082 Score = 109 bits (120), Expect = 1e-18 Identities = 498/780 (64%), Gaps = 15/780 (2%) Strand=Plus/Minus Query 31380 GGACCGTGCTCTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCA 31439 ||||| ||||| |||| |||||||| |||||||| || || |||| || |||| Sbjct 300402 GGACCCAGCTCTGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCG 300343 Query 31440 AAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAG---TCAAAAGGCATGCGCAGCTTG 31496 ||||| | |||||| ||| || || | | || || || |||| | | Sbjct 300342 AAGATGTGGATGTTGAGCAG-TTGA--GCTTCTGGGCTTTCGAACGGGTAACGCATCAGG 300286 Query 31497 AAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTA 31556 | ||| |||| | ||||||||| || | || || || || |||| |||| Sbjct 300285 ATGAAGGCGTCTGCCAAACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGAC 300226 Query 31557 GTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTTCTTGGCC 31616 ||| || ||||| | | |||| | ||| |||||| |||||| |||||||| | Sbjct 300225 CTCTCTGCTTCGGGTACGGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACG 300166 Query 31617 AGAATCTTCACGTGCTTGCGAAGGTCCTCAAAGTCGTAGGCACCGTTCT----TGACGTA 31672 | | ||| | | | || | || ||||||| | | ||| || ||||||| Sbjct 300165 ATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTCGAAAGT-CCGCTCAGGCGTGACGTA 300107 Query 31673 GTTCTGGAGGACGATGCTTCCAATGACACACACCGCCGTTTCGTCCGTAGAAGTGTATTC 31732 | | |||| ||||| | | | ||| |||||| |||||| | ||||| || Sbjct 300106 CATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTC 300047 Query 31733 GACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGCATGTTCTT 31792 || ||||| | || || ||||||| | |||||||||| || ||| || |||| Sbjct 300046 CACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTT 299987 Query 31793 CACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGA 31851 | ||| || || |||||||| |||| ||| ||| | || || || |||| | || Sbjct 299986 CCTGTTGCAGGC-GTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGA 299928 Query 31852 TCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTCGGACTCGT 31911 | || || | ||| || | | || || || || |||||| | | ||| || || | Sbjct 299927 TGATGGCGTACCAAACCTGCTGAGCCTTCACCACCTTCTTCACCCTCCCTTCCTTTTCAT 299868 Query 31912 AGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCT 31971 | | || || | ||| |||||| || || ||| || ||||||||||| | Sbjct 299867 ATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGT 299808 Query 31972 TGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCA 32031 |||| | || ||||| | | | ||| |||| ||||||||||||||| | Sbjct 299807 TGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGA 299748 Query 32032 GCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTC-GG 32090 |||||| ||||| || || | ||||| | || ||||| |||| | | || Sbjct 299747 TCCACATGGCGTAGAATAGGTCTCTGGCTCTCTGCTCCTCCT-TTCCTGTGTTCTTCTTC 299689 Query 32091 AGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCC 32150 ||| ||||||||| | | || ||| ||||| ||||||| |||||| | |||| Sbjct 299688 AGCTCCAGGAAGTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCC 299629 >seq258 Length=1028905 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 693376 CATGACGCCCATCCTCTGGTACTCTCCAACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 693317 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| ||||||||||| Sbjct 693316 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTC 693281 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| || || ||| |||||||||| ||| ||||| Sbjct 705833 CATGACGCCCATCCTCTGGTACTCTCCAACGCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 705892 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| ||||||||||| Sbjct 705893 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTC 705928 >seq212 Length=1146884 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 |||||||||||||| |||||||||||||| ||||| ||||| ||| | ||| || || Sbjct 458805 CCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTC-GCTGGGTTCAACCTC 458863 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| ||||| |||||||| | || || ||||| |||||||| Sbjct 458864 AAGGGTAATGGTCTTTCCCGTCAACGTTTTCACGAAGATCTGCAT 458908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921515733727480