Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq656 547 1e-150 seq761 118 2e-21 seq197 111 3e-19 seq258 109 1e-18 seq54 93.3 8e-14 >seq656 Length=490082 Score = 547 bits (606), Expect = 1e-150 Identities = 1092/1600 (68%), Gaps = 56/1600 (4%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||| | |||| || | | | ||| | ||||||||||| ||| |||||| Sbjct 300741 GATCCGTTGTTGGCGATCAGTTTGTTCTTCATCTCCTCGTTCCACAGCCCC---CGCTCC 300685 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || ||| || ||||| || || | ||| |||||||| || || || | ||| Sbjct 300684 GTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGG 300625 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | ||||||| ||| |||||||||| ||||| || ||| Sbjct 300624 GTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTG 300565 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || |||||||| | || |||||| ||||||||||||||||| | ||| Sbjct 300564 GAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTC 300505 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTTTGAGGCCCCACAT 244305 | ||| ||||||||||||||| | | | | ||| || | |||||| Sbjct 300504 TCCTTCAGCAGCTTCCAGTCCCACATGTCGGTGGGAGTCTTCTC----------CCACAT 300455 Query 244306 GTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTC 244365 ||| |||| || | || |||||||| || ||| ||||| ||| ||| ||||| Sbjct 300454 GTCGTACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCA- 300396 Query 244366 GCGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC- 244423 || ||| ||||| | ||||| | || ||||||||||||||||||||||||||||| Sbjct 300395 GCTCTGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGT 300336 Query 244424 --ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA 244481 || ||| || || | | || | || ||| ||| | ||||| |||||| Sbjct 300335 GGATGTTGAGCA-GTTGAGCTTCTGG--GCTTTCGAACGGGTAACGCATCAGGATGAAGG 300279 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 |||| |||| ||||| || ||||| |||||||| | ||| || |||||||| | | | Sbjct 300278 CGTCTGCCAAACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTG 300219 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGC 244601 ||||||| |||||||| ||||| || || | |||||| ||||| ||||| Sbjct 300218 CTTCGGGTACGGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCT 300159 Query 244602 GGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCC 244661 | ||| ||||||| || ||||||| | || || || || | Sbjct 300158 TGGTGACCGAGGCCAGCTTCTTAAAGTCGAA-----AG------TCCGCTCAGGCG---- 300114 Query 244662 TCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 | || || ||||||||||| | ||||||||| ||||| |||||||| ||| | ||| Sbjct 300113 TGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGG 300054 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||||| || ||||| ||||||||||| |||||||||||||||||||||| ||| || | Sbjct 300053 TGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 299994 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 || ||| |||||||||||||||||| |||||| ||||| |||||| || ||| | Sbjct 299993 TGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAG 299934 Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTG 244901 ||| || | || ||| | | | |||||| ||| | | || | || || Sbjct 299933 ACTCGATGATGGCGTACCAAACCTGCTGAGCCTTCACCACCTTCTTCACCCTCCCTTCCT 299874 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGC 244961 || || ||||| || ||| ||||| |||||| |||||| || ||||| | Sbjct 299873 TTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGAC 299814 Query 244962 ACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 || || ||| ||||| || ||| || | | || || |||| |||||| ||| Sbjct 299813 ACT-CGTTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGG 299755 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 || |||||||| | ||| | ||| ||||| |||| |||||||| ||| || |||||| Sbjct 299754 TCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTC 299695 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 ||| ||||||||| ||||| || || || | |||||| ||||||| ||| | |||| | Sbjct 299694 TTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAG 299635 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGAT 245196 || || || ||||||||||| ||||||| || | | || ||| |||| | | Sbjct 299634 GCTCCCGGTCGCTTGTTGCCACCCTGGT----CAACATAGCGGGCGGTGTTGTTGTAAAC 299579 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTT 245256 ||||| | || || | || || |||| |||||| ||||| ||||||| || | Sbjct 299578 CCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGT 299519 Query 245257 GCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCA 245316 |||| | ||| | | || ||| | ||||| ||| ||||| ||||||||||| Sbjct 299518 CGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCA 299459 Query 245317 GCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCA 245376 ||| | |||||| |||||||| |||||||| ||||||| |||||| ||||| Sbjct 299458 CTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCA 299399 Query 245377 GGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 | ||||||||| | | | | | | | |||||| || || || ||||||||| || Sbjct 299398 GCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAA 299339 Query 245437 GTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGA 245495 | | || ||| || | ||| |||| | ||||| |||| | ||||||| Sbjct 299338 CCA-CTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGA 299280 Query 245496 T-CTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCTCGGGTCC 245553 | | | | | | ||||||||| ||||||| ||||| |||| | | || Sbjct 299279 TACCGACCGACAC-CCTCATGAGCATGTGCTGCGGGCG-CTCGGCCACTTTCCCGTTGAT 299222 Query 245554 CTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| |||| ||||||||||| || || ||||| |||||| Sbjct 299221 CTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAG 299182 >seq761 Length=414005 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||| |||||||| || ||||| | ||| ||| | ||| |||| ||||||||| || Sbjct 275658 CATAAAGAGGTCTGGAATCCACAAGGCGAAGAACAAGTCTCTGGCCCTCTGCTCTTCTTT 275717 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 |||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||| ||| Sbjct 275718 ACCAGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCGTGCCAGGGCTCCAGGTA 275777 Query 245131 GACAGCGAGGGCGCCGGG 245148 || || | ||| || || Sbjct 275778 CACCGCAAAGGCCCCTGG 275795 Score = 107 bits (118), Expect = 4e-18 Identities = 158/217 (73%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG--TCGCGCTGGGCCAGCT 244379 ||||||||||| || ||| |||| ||| ||||| ||| | |||| |||| | Sbjct 274010 CCCTTGCTGACAGGAGAGCCAGCGTACGTCTCATAGGGTCCGAATTCTGCTG--CCAGTT 274067 Query 244380 TACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC 244439 ||| || | || ||||| ||||||||||||||||||||||| |||| | || | Sbjct 274068 CACAACTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCGAAGATGTGAATGTTGA-GTAAC 274126 Query 244440 -GGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 |||||| ||| | | ||| ||| || ||| | |||||| |||||||||| |||| Sbjct 274127 TGGGCCT--CCGGACTTTCGAATGGGTAGCGCATGAGGATGAAGGCGTCGGCCAGACCCT 274184 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||| || || || || || ||||| ||||||||||| Sbjct 274185 GCACACCAATTCCTATTGGCCTGTGACGCTTGTTGGA 274221 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| |||||||| || ||||| | ||| ||||| |||||| || | ||| ||| Sbjct 273597 ACCTGGAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTAAGCCTCTATG 273656 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || ||||| || | || || || Sbjct 273657 GACTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGTGGGCATCGGGGCCAAAAGAAGG 273716 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 273717 CTGTTCCTCACACCGTGCCT 273736 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 || || || ||||| || || ||| | |||||||||||||| | || || |||| ||| Sbjct 275199 ACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTC 275258 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 ||||||||||||||||||||||||| |||| Sbjct 275259 CTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 275290 >seq197 Length=1194064 Score = 111 bits (122), Expect = 3e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | ||||| || ||| | || || ||||| ||||||||||| ||| | || || Sbjct 1112577 GGGGAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATTTGCT 1112636 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||||| ||| ||| ||| || |||||||| || |||||||| || ||||| Sbjct 1112637 GCCATCTACTGGCTAAAGAAGAGAGGCCTC-ATGCCCGGCCTTACCTTCTCCAATGAACT 1112695 Query 42815 CATCAGCAGGGACGA 42829 |||||||||||| || Sbjct 1112696 CATCAGCAGGGATGA 1112710 >seq258 Length=1028905 Score = 109 bits (120), Expect = 1e-18 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || ||||||| ||||| ||||||||||| ||| |||| ||| ||||||||| Sbjct 692510 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 692569 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | | | | ||||||||| || |||||| ||||| ||||||||||| Sbjct 692570 GGCTGAAG-AAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGA 692628 Query 42825 GACGAGG 42831 ||||||| Sbjct 692629 GACGAGG 692635 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || |||| || ||||| ||||||||||| ||| |||| ||| ||||||||| Sbjct 706721 TGGTGGCGTTCGCCGCAGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 706662 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | | | | |||||| || || |||||| ||||| ||||||||||| Sbjct 706661 GGCTGAAG-AAACGCGGCCTGATGCCTGGCCTGACCTTCAGCAACGAGCTCATCAGCAGA 706603 Query 42825 GACGAGG 42831 ||||||| Sbjct 706602 GACGAGG 706596 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 705923 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 705864 Query 43130 CGTCGCCGACTACCAG 43145 ||| | || |||||| Sbjct 705863 CGTTGGAGAGTACCAG 705848 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 693286 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 693345 Query 43130 CGTCGCCGACTACCAG 43145 || | || |||||| Sbjct 693346 GGTTGGAGAGTACCAG 693361 >seq54 Length=1921180 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014 ||||||| ||| ||||||||||| |||||| | | |||||| || ||||| || ||| Sbjct 1827854 GACAGGAGCACCGCGATCGGACAGGTGATCAGCGCTTACCTGGAGAAGAAGAGTGAGCTG 1827795 Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA 243058 || || ||| ||| ||||| |||||||| |||||||| ||||| Sbjct 1827794 GAGGACCACACCGTTCACCTGCTGTTCTCTGCCAACCGCTGGGA 1827751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944229904541840