Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1203 105 6e-18 seq155 105 6e-18 >seq1203 Length=218618 Score = 105 bits (116), Expect = 6e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20235 TAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAG 20294 |||| || |||| ||| || | ||| || || | |||| ||||||||| ||||| |||| Sbjct 2119 TAAGTCCTGTAATATGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAG 2060 Query 20295 GAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAG 20354 | || || | ||||||||| |||| | ||| ||||||||||| || ||||| || ||| Sbjct 2059 GCACCCCTAGACCCATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCAC 2000 Query 20355 CTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCAT 20397 ||||| || || || | ||| ||||| || || ||||| Sbjct 1999 AGACATAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1957 >seq155 Length=1349651 Score = 105 bits (116), Expect = 6e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20235 TAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAG 20294 |||| || |||| ||| || | ||| || || | |||| ||||||||| ||||| |||| Sbjct 1338986 TAAGTCCTGTAATATGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTGAAAG 1338927 Query 20295 GAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAG 20354 | || || | ||||||||| |||| | ||| ||||||||||| || ||||| || ||| Sbjct 1338926 GCACCCCTAGACCCATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCAC 1338867 Query 20355 CTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCAT 20397 ||||| || || || | ||| ||||| || || ||||| Sbjct 1338866 AGACATAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCAT 1338824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441321716615560