Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq351 123 6e-23 >seq351 Length=862037 Score = 123 bits (136), Expect = 6e-23 Identities = 173/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 288232 ATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGG 288291 |||||||| || ||||| | ||| | ||| || || || | ||| || || ||| Sbjct 703958 ATGATTCAC---TGGCCACCCCTGAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGG 703902 Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || || ||||||| || ||||| || ||||| | || || || || |||||||| | | Sbjct 703901 ATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTC 703842 Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 || || | ||||| || || ||||||||||| || || || ||||| || || | Sbjct 703841 TGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTG 703782 Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 ||||| | || || || || ||||| ||||| ||||| || ||||| || || |||||| Sbjct 703781 TCGCTTGGCTCCACCTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGC 703722 Query 288472 AT 288473 || Sbjct 703721 AT 703720 Score = 114 bits (126), Expect = 3e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 288301 TCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAA 288360 |||| || ||||| || ||||| | || ||||| ||||||||||| | ||| || | Sbjct 686720 TCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCA 686661 Query 288361 TCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || ||||| ||||| || || ||||| ||||| || | ||||| | Sbjct 686660 GGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTCACATTTTCAATGGTGTCGCTGGGC 686601 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 || || || || ||||| ||||| || || || || |||||||| ||||||||| ||| Sbjct 686600 TCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATTTTGT 686543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179514456492602