Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq656 197 2e-45 seq761 95.1 1e-14 seq258 87.8 2e-12 seq197 86.0 7e-12 >seq656 Length=490082 Score = 197 bits (218), Expect = 2e-45 Identities = 889/1389 (64%), Gaps = 40/1389 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| || ||||||||| Sbjct 300621 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAG 300562 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || |||||||| | | || | || || ||| Sbjct 300561 GCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 300502 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || || | |||||| | || | | | || |||||| || |||||||| Sbjct 300501 TTCAGCAGCTTCCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAGG 300442 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || |||| | | | || || || || | |||||||| || ||| | |||||| | Sbjct 300441 ATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGT 300382 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| |||| ||||| ||||| |||| || || ||||| || ||| | || | || Sbjct 300381 TCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGA--GCA 300324 Query 114242 -TTGGCCTCGTCGGAAT-CAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 114299 ||| || | || | | |||| | || || || || | || || | ||| | Sbjct 300323 GTTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCT 300264 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGC----GGTCTCCACG 114355 |||| |||| || || || || || | | || ||| | || ||| ||| Sbjct 300263 GGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGT----ACG 300208 Query 114356 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 114415 || || | || | || || | | | || || || || || ||||| |||| Sbjct 300207 GGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAG 300148 Query 114416 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 ||||| | | || ||| | || ||| |||| ||| | |||||||| Sbjct 300147 GCCAGCTTCTTAAAGTCGAAAGTCCG---CTCAGGCGTGACGTACATGTTGAGGGCGATG 300091 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 || ||||| ||||| || | ||| ||||| |||||||| | || ||||| || Sbjct 300090 GAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAG 300031 Query 114536 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 114595 | || | ||| |||||||||| ||||| || || ||| |||| || || ||| Sbjct 300030 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCC 299971 Query 114596 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 114655 |||||||||||||| |||||||| || ||||| || |||| || || || | ||| || Sbjct 299970 TTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACC 299911 Query 114656 T-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 114714 | | | | || || | || | | ||| |||| || || || |||||||| Sbjct 299910 TGCTGAGCCTTCACCACCTTC-TTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTT 299852 Query 114715 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 114774 |||||||| || ||| | ||| ||||| || || | || || | || || Sbjct 299851 CTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGA 299792 Query 114775 CCATTGACCACCCTCCTCAACACGCT--TCATGAAGAGGTCTGGGATCCAGAGAGCTGAG 114832 ||| | || | ||| ||| || ||||||| ||||| |||||||| | || || Sbjct 299791 CCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAG 299734 Query 114833 AAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 114891 || || || | | | ||| || | | || || || || ||||| ||||| Sbjct 299733 AATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGTC 299675 Query 114892 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA---CC 114948 | | ||| ||||||||| |||||||||| |||| | ||| || || Sbjct 299674 GAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCC 299615 Query 114949 AGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATC 115008 | |||||| ||||| | || ||| || | || || ||||| || | | |||| Sbjct 299614 ACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATT 299555 Query 115009 AGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CA--TCATGGATGT 115064 || | ||| || || || || | | | | ||||| || ||| | Sbjct 299554 GGAGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGC--- 299498 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 || || || || || || | || || || | ||||||| | | || || |||||| Sbjct 299497 -CACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGA 299439 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || ||||| |||| |||| | |||| ||||||||||| |||| || | || | Sbjct 299438 TGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCC--G 299381 Query 115185 GT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 115241 || || || ||||||||||||||||| | |||||| ||||| || | | |||| | Sbjct 299380 GTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCA 299322 Query 115242 TATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 115301 | ||||||||| | | ||||| |||||||| ||||| ||||||| ||| |||| || Sbjct 299321 GGTTGTAGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCA 299262 Query 115302 TAAACATGT 115310 | | ||||| Sbjct 299261 TGAGCATGT 299253 >seq761 Length=414005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | ||||||||||||||| ||| ||||| ||||| Sbjct 273630 TAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 273689 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| ||||||||||| Sbjct 273690 GCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 273721 >seq258 Length=1028905 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||| ||| || ||||| || || || |||| Sbjct 692635 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 692576 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || || ||| || || |||||||||||||||||||| ||||||| Sbjct 692575 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 692516 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 692515 CCACCACACGCTC 692503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||| ||| || ||||| || || || |||| Sbjct 706596 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCAGGCATCAGGCCGCGTTTCT 706655 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || || ||| || || |||||||||||||||||||| ||||||| Sbjct 706656 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACTGCGGCGAACG 706715 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 706716 CCACCACACGCTC 706728 >seq197 Length=1194064 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 126079 GATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 126138 |||||||||||| |||||| || || |||||||| || | |||||| | |||| | || Sbjct 1112699 GATGAGTTCATTGGAGAAGGTAAGGCCGGGCATGAGGCCTCTCTTCTTTAGCCAGTAGAT 1112640 Query 126139 CGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 ||| |||||| || ||||||||||| ||||| ||| || || || | || ||||| Sbjct 1112639 GGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 1112580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597284463787720