Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq542 102 9e-17 seq3060 93.3 5e-14 seq66 93.3 5e-14 seq359 89.7 6e-13 seq10 89.7 6e-13 seq2923 87.8 2e-12 seq1942 86.0 7e-12 >seq542 Length=601952 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||||||||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 479567 AAAAATTTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 479626 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 479627 TCACCACTATACTAACGAGGA 479647 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 ||||| |||| || | | |||||||||| ||||||||||||||||||||| ||||||| Sbjct 485734 AATTTCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCA 485675 Query 57061 CCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 485674 CCACTATACTAACGAGGA 485657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 486877 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 486936 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 486937 CTATACTAACGAGGA 486951 >seq3060 Length=10288 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 9940 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 9881 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 9880 TATACTAACGAGGA 9867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||| ||| |||| || | | ||| |||||| ||||||||||||||||||||| | Sbjct 9282 AAAAAGTTTAAACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 9223 Query 57055 TACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||| |||||| Sbjct 9222 TACTCACCACTATACTAACGAGGA 9199 >seq66 Length=1849609 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 279405 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 279346 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 279345 TACTAACGAGGAGTGA 279330 >seq359 Length=839850 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 420361 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 420420 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 420421 TACTAACGAGGA 420432 >seq10 Length=2910258 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 64276 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 64217 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 64216 TACTAACGAGGA 64205 >seq2923 Length=11969 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | ||||| || | | |||||||||| || |||||||||||||||||| ||||| Sbjct 6390 AAAAGTGTCTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACT 6331 Query 57059 CACCACTATACTACCGAGGATTG 57081 |||||||||||| |||||| || Sbjct 6330 GACCACTATACTATCGAGGACTG 6308 >seq1942 Length=70173 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | |||||||||||||||||| ||||||||| | | ||||||||||||| Sbjct 69859 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCTGCGTGACAGTCAGGGATACTCACCACTA 69800 Query 57067 TACTACCGAGGATTGAA 57083 ||||| ||||| || || Sbjct 69799 TACTAACGAGGGTTCAA 69783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543149929908560