Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq656 295 7e-75 seq761 87.8 2e-12 >seq656 Length=490082 Score = 295 bits (326), Expect = 7e-75 Identities = 1043/1608 (65%), Gaps = 51/1608 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| ||||||||| |||||| || || || || ||||| | || | Sbjct 299174 TACAACTTCTTTGGCTTCAAAACCCTGGAGCGCTCCTATCTGCTGAAGATCAACGGGAAA 299233 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| ||||| || |||| ||| | || | |||| || ||||| | ||| Sbjct 299234 GTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAAAAGAC 299293 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || ||| | || || || ||| | || ||| ||| ||| || Sbjct 299294 ATTGACGCCGCCATTGAGACCTA-CA---ACCTGCTGTCGGAGAAGTGGTTCACCCACGC 299349 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 | | || ||||| |||||||| |||||| |||| | ||| |||| || |||||| Sbjct 299350 CTCGCCAACCCTCTTCAACGCCGGGACCAACCGGG--CGCAGCTGTCCAGCTGCTTCCTG 299407 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | | |||| ||| |||| || || | ||||| ||| ||| | || || | Sbjct 299408 CTCGCCATGAAGGATGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTC 299467 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || || |||| ||| || || ||||| | || | | | | | | || | Sbjct 299468 ATTTCCAAATCCGCTGGCGGGATCGGCGTGGCGGTGAGCTGCATCAGATCGACTGGGAGC 299527 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| || || || |||| |||||| || || ||||| ||||| ||||| | |||| Sbjct 299528 TACATCGCTGGCACTAACGGCAACTCCAATGGGCTGGTCCCGATGCTGCGGGTTTACAAC 299587 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || ||||| || ||||||||||| | | | ||| | ||||| | || Sbjct 299588 AACACCGCCCGCTATGTTGACCAGGGTGGCAACAAGCGACCGGGAGCCTTCGCCATGTAC 299647 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||| || ||| | ||| | || ||| |||||| || || Sbjct 299648 CTGGAGCCGTGGCACTTTGATGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAG 299707 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | |||| ||||||||||| |||||||| | ||| | || ||||| || ||||| Sbjct 299708 GAGGAGCAGAGAGCCAGAGACCTATTCTACGCCATGTGGATCCCTGACCTGTTCATGAAG 299767 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || |||| ||| | |||| || | |||||||| || |||||||| ||| | Sbjct 299768 AGAGTGGAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAACGAGTGTCCCGGGCTGGAC 299827 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 || || || | ||||| | | || || || ||| | | || | || Sbjct 299828 GAGTGCTGGGGGGAGGAGTTTGAGAAGCTCTACACTAAATATGAAAAGGAAGGGAGGGTG 299887 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | |||||| || | ||| | || | ||| | ||| | || ||| ||| || Sbjct 299888 AAGAAGGTGGTGAAGGCTCAGCAGGTTTGGTACGCCATCATCGAGTCTCAGACGGAAACC 299947 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || ||||||||||| | | ||||||| | |||| ||| |||||||||| |||| Sbjct 299948 GGGACGCCCTACATGCTTTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTG 300007 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || |||||| || || || ||||| ||||| || ||||| || ||||||| Sbjct 300008 GGCACCATCAAGTGCAGCAACCTCTGCACGGAGATCGTGGAGTACACCAGCAAGGACGAG 300067 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 | || || |||||||||| ||||||| ||| | || | || || | |||| || Sbjct 300068 GTGGCGGTCTGTAACCTGGCCTCCATCGCCCT--CAACAT--GTACGTCACGCCTGAGCG 300123 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCG--CGGGAAGG--ATGGTCTT 94727 ||| ||||| | || |||| | | ||| | |||| || || Sbjct 300124 G--ACT------TTCGACTTTAAGAAGCTGG----CCTCGGTCACCAAGGTGATCGTGAA 300171 Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 ||||||||||| | | || || | |||| ||||||||| || || || |||| || || Sbjct 300172 GAACCTGAACAAGATCATTGAGATCAACTACTACCCCGTACCCGAAGCAGAGAGGTCCAA 300231 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || ||||||||||| ||||| ||||||||||| || ||||| | | |||| Sbjct 300232 CAAACGCCACCGGCCCATCGGGATCGGAGTCCAGGGTTTGGCAGACGCCTTCATCCTGAT 300291 Query 94848 GCGTCTGCCCTACGA---CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAG 94904 |||| || | ||| | | | | | | | | | || | |||| ||||| | Sbjct 300292 GCGTTACCCGTTCGAAAGCCCAGAAG-CTCAACTGCTC--AACATCCACATCTTCGAGAC 300348 Query 94905 CATTTATTACGGGGCCATGAAA-CAATCCGTCCACTTG-GCCAGATCGGACGGCGGGCCA 94962 ||| || |||| ||| || | | | | | ||| | | |||| | | || || Sbjct 300349 CATCTACTACGCCGCCCTGGAGGCCAGCTGCGAACTGGCGGCAGAGCTG-----GGTCCT 300403 Query 94963 CACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGT 95022 |||| ||| | || || || | | ||||| | |||| |||| | |||| Sbjct 300404 TACGAGACGTACGAAGGCTCACCTGTCAGCAAAGGCATCCTCCAGTACGACATGTGGGAG 300463 Query 95023 GTGAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGATGTTATCAAACAC 95079 || ||| | | ||| |||||| ||||| || | | | ||| ||||||| Sbjct 300464 AAGACTCCCACCGACATGTGGGACTGG-AAGCTGCTGAAGGAGAAGATCGC--CAAACAC 300520 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || |||| ||| ||||| ||||||||||||||||||||||||| || |||||||| Sbjct 300521 GGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACGGCCTCCACCGCTCAGATCCTG 300580 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 |||||||||||||| |||| ||| |||| |||| | |||| | | |||| ||| || Sbjct 300581 GGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCC 300640 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || |||| || |||| ||||| || |||||||||| | ||| ||||| Sbjct 300641 GGAGAGTTCCAGATCGTCAATCCTCACCTTCTCAAGGACCTGACGGAGCGGGGGCTGTGG 300700 Query 95260 GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAG 95307 || || | |||||| ||||| | | |||||| ||| | ||| Sbjct 300701 AACGAGGAGATGAAGAACAAACTGATCGCCAACAACGGATCCATTCAG 300748 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 ||||||||||| || ||||| || | | | || || ||| | |||||| | | ||| Sbjct 298784 GTCATGTTCGATAAAATCACCTCCCGTATCCAGAAGCTCTGCTACGGTCTGAATGCAGAC 298843 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 ||||||||||| | | || ||||||||| |||| ||||| | || ||| ||||| Sbjct 298844 TTCGTGGATCCGGCCCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACC 298903 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || ||||| || || || ||||||| ||| | ||| || || |||||| Sbjct 298904 ACCGTGGAGCTAGACACGCTAGCAGCGGAGATCGCGGCCACCCTGACGACCAAGCACCCG 298963 Query 93511 GACTACTCCAT 93521 |||||| |||| Sbjct 298964 GACTACGCCAT 298974 >seq761 Length=414005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 94172 AGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACC 94231 |||| |||| ||||| || || |||||||||||||| |||||| | || | || | Sbjct 275793 AGGGGCCTTT-GCGGTGTACCTGGAGCCCTGGCACGCTGACGTGTTTGAGTTTTTGGAGC 275735 Query 94232 TGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGG 94291 || |||||| || || || | |||||||||||||| | |||| ||| | ||| Sbjct 275734 TGAAGAAGAACACTGGTAAAGAAGAGCAGAGGGCCAGAGACTTGTTCTTCGCCTTGTGGA 275675 Query 94292 TGCCAGACCTTTTTATGAAACGCGTCGA 94319 | |||||||| ||||||||||| || || Sbjct 275674 TTCCAGACCTCTTTATGAAACGAGTGGA 275647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494665941973640