Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq656 241 1e-58 >seq656 Length=490082 Score = 241 bits (266), Expect = 1e-58 Identities = 958/1493 (64%), Gaps = 50/1493 (3%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || ||||| |||| || || Sbjct 300615 TTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTG 300556 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 |||||| |||| || || |||| || |||||| || | ||||||| | Sbjct 300555 GGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGC 300496 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| ||||||| | | || ||| | ||||||||||||||| | | ||| Sbjct 300495 AGCTTCCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCT 300436 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG-GCCAGTTCGCA 153313 ||| | || ||| | |||| ||| || || || ||||||||||| Sbjct 300435 TTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCA-GCTCTGCCGCCAGTTCGCA 300377 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| ||| ||| || | ||||| | || Sbjct 300376 GCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGC 300317 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 |||| ||| ||| |||| |||| ||| | |||||||| |||| |||||||| || Sbjct 300316 TTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCC 300257 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTT-GCTGCGCCTCGC-GCTC--GCTATGGGATAGT 153489 || |||||||| || || |||| | || |||| | ||| | || ||| |||| Sbjct 300256 GATCCCGATGGGCCGGTGG----CGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGT 300201 Query 153490 GATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTT 153549 ||| || || || ||||| ||||| ||| | ||| || || | || || | Sbjct 300200 AGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCT 300141 Query 153550 TCTCGAAATCATAGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCC 153608 ||| || || | ||| || | |||| ||| | || | ||| || || ||| Sbjct 300140 TCTTAAAGTCGAAAGTCCGCTC----AGGCGTGACGTACATGTTGAGGGCGATGGAGGCC 300085 Query 153609 AGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTG 153668 || |||||||| ||| ||| || | | |||||| ||||||||| | |||||||||| Sbjct 300084 AGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTG 300025 Query 153669 CTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAG 153728 ||||| || ||| ||||| || ||||| ||||| || | ||||| ||||| ||| | Sbjct 300024 CTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAA 299965 Query 153729 AGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGCA 153780 |||||||| || ||||| || || | |||| ||| ||||| ||| Sbjct 299964 AGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACC--TGCT 299907 Query 153781 GGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCC-TCGCTCTCGTATCGCTCGTACAGT 153839 | ||| | | |||| || | | | ||| || | || ||| ||| || Sbjct 299906 GAGCCTTCAC---CACCTTCTTC----ACCCTCCCTTCCTTTTCATATTTAGTGTAGAGC 299854 Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899 ||||||||| || || |||| ||| | || |||||||||| | ||||||||||| Sbjct 299853 TTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGG 299794 Query 153900 GACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 ||||| | || | | || | ||||||||| || || | ||| | ||||| Sbjct 299793 GACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAG 299734 Query 153960 ATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGC 154017 | ||||| | || | ||| |||||| || |||| ||||| | || | | Sbjct 299733 AATAGGTCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGT 299676 Query 154018 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTC 154074 | | || |||||| || || | ||| | ||| | ||| || ||| || | Sbjct 299675 CGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGC 299616 Query 154075 CGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGC 154134 | ||||| || || | ||| | | |||||| | || |||| ||| || |||| || Sbjct 299615 CACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCAT 299556 Query 154135 TTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA- 154193 | | | ||||||| || | ||| | ||| | | | || | ||||||| | | Sbjct 299555 TGGAGTTGCCGTTAGTGCCAGCGATGTAGCT--CCCAGTCG---ATCTGATGCAGCTCAC 299501 Query 154194 ----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTA 154249 ||||| || ||||| || | || || ||| ||||| | ||| || ||| Sbjct 299500 CGCCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTA 299441 Query 154250 GATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAAT 154309 |||||| |||||||| || || | | |||||| ||| || ||| |||| Sbjct 299440 GATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCG 299381 Query 154310 GCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCAT 154369 | || || || |||||||| || ||||| || ||| || | || || Sbjct 299380 GTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 299321 Query 154370 GCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCAT 154429 | ||| || || |||||| | || || || | ||||| || |||| || || | ||| Sbjct 299320 GTTGTAGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCAT 299261 Query 154430 GAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTC 154489 ||||||||||||||| || ||||| ||| | || ||||||| ||||| || Sbjct 299260 GAGCATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTC 299201 Query 154490 GAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGG 154542 ||||||||| | || || | ||||| ||||||| |||| | ||||| Sbjct 299200 CAGGGTTTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGG 299148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496204963830480