Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq3873 848 0.0 >seq3873 Length=5534 Score = 848 bits (940), Expect = 0.0 Identities = 1112/1536 (72%), Gaps = 18/1536 (1%) Strand=Plus/Plus Query 15760 GACGACATCTTCCTGCTGAAACAGCGCCTGGCCGAACAGGAAGCGCTGATCCACGCCCTG 15819 ||||| ||| | | ||||||| | ||||||||| |||| | || | | | || Sbjct 37 GACGAAATCCTGCGACTGAAACGACTACTGGCCGAAAAGGAGTCACTCAATCGTGTTTTG 96 Query 15820 CAGGAAAAGCTGAGCAACCGGGAGCGCGAAATAGACCATCTGCAGGCGCAGCTGGATAAA 15879 || | ||| || | ||||||||||||||||| | |||| |||||||| || || Sbjct 97 CATGCCAAGTTGGAGGAGCGGGAGCGCGAAATAGAGCGCCTGCTTGCGCAGCTCGACAAG 156 Query 15880 CTCCGCCGGATGAACTTCGGCAGTCGTTCCGAAAAAGTCTCCCGCCGTATCGCACAAATG 15939 || || || ||| | || ||||| | ||||| ||| || | || ||||| || || | Sbjct 157 CTGCGGCGTATGTATTTTGGCAGCCAGTCCGAGAAACTCGCTCGTCGTATTGCCCAGACT 216 Query 15940 GAAGCCGATCTGAACCGGCTTCAGAAAGAGAGCGATACGCTGACTGGTAGGGTGTATGAC 15999 ||||| | ||| | || ||| ||||||| || | | || || ||||| ||||| Sbjct 217 GAAGCACAACTGCAAATACTCCAGCAAGAGAGTGACGCTATCACCGGCCGGGTGGATGAC 276 Query 16000 CCGGCAGTACAGCGTCCGTTGCGTCAGACCCGCACCCGTAAGCCGTTCCCTGAATCACTA 16059 || || |||| ||| || | || ||||||||||| || || || |||||| | | || Sbjct 277 CCAGCGGTACCGCGGCCACTTCGCCAGACCCGCACTCGCAAACCCTTCCCTCAGGCCCTT 336 Query 16060 CCCCGTGACGAAAAGCGACTGTTGCCTGCGGC-GCCGTGCTGCCCGAACTGCGGCGGTTC 16118 || ||||| || | || |||| || | | || || ||||||| | || || || | Sbjct 337 CCTCGTGATGAGCACCGCCTGTGTCCAACAGAAGCAGT-CTGCCCGGAATGTGGTGGAAC 395 Query 16119 ACTGAGCTATCTGGGCGAGGATACCGCCGAACAGCTGGAGTTGATGCGTAGCGCCTTCCG 16178 ||| || || || || ||||| || || ||| | ||| |||| || || |||||||| Sbjct 396 GCTGTCATACCTTGGAGAAGATACTGCGGAGCAGTTAGAGCTGATACGCAGTGCCTTCCG 455 Query 16179 GGTTATCCGGACGGTACGGGAAAAACATGCCTGTACTCAGTGCGATGCCATCGTGCAGGC 16238 ||| ||||| || || ||||| ||||| |||| ||||| ||| |||| || || Sbjct 456 GGTCATCCGCACAGTTCGGGAGAAACACACCTGCGGGCAGTGTGATTTCATCACACAAGC 515 Query 16239 ACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGCTGGCCCGCGT 16298 || || || || || || ||||||||||| | ||||||||| || | ||||| || || Sbjct 516 GCCAGCGCCATCACGCCCTATCGAGCGGGGGAGCGCCGGACCTGGCTTACTGGCTCGGGT 575 Query 16299 GCTGACCTCGAAGTATGCAGAGCACACCCCGCTGTATCGCCAGTCAGAAATATACGGCCG 16358 || ||||| || |||||||||||||| || |||||||||||||| ||||| || | ||| Sbjct 576 ACTCACCTCCAAATATGCAGAGCACACTCCACTGTATCGCCAGTCGGAAATCTATGCCCG 635 Query 16359 GCAAGGTGTGGAGCTGAGGCGTTCACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCT 16418 || |||||||||||||| ||||| |||| || ||||||||||||||||| ||| | | Sbjct 636 TCAGGGTGTGGAGCTGAGTCGTTCGGTGCTCTCTGGCTGGGTGGATGCATGTTGCAGATT 695 Query 16419 GCTGTCTCCGCTGGAAGAGGCGCTTCATGGC--TATGTCATGACTGACGGCAAACTCCAT 16476 |||||| |||||||| |||||||| | ||| ||||| |||| || |||||||| || Sbjct 696 GCTGTCACCGCTGGAGGAGGCGCTGC--GGCAGTATGTGCTGACCGATGGCAAACTACAC 753 Query 16477 GCCGATGATACCCCGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGAAGACCGGGCGG 16536 || ||||| ||||| |||| ||||||||| || || ||||| ||||| || || ||||| Sbjct 754 GCAGATGACACCCCAGTCCCGGTACTGCTCCCCGGCAATAAAAAGACAAAAACAGGGCGT 813 Query 16537 TTGTGGGCGTATGTTCGTGATGACCGCAATGCAGGGTCAGCGTTGGCACCTGCAGTGTGG 16596 ||||| ||||||| |||||||| ||||| || || || | || | || || || ||| Sbjct 814 CTGTGGACGTATGTACGTGATGATCGCAACGCTGGCTCCGAACTGCCGCCAGCCGTCTGG 873 Query 16597 TTCGCTTACAGCCCGGACAGAAAAGGCATCCATCCGCAGACTCATCTTGCCTGCTTCAGC 16656 ||||| ||| || || ||||| || |||||||||| | |||||| || || ||| Sbjct 874 TTCGCCTACTCTCCTGATAGAAAGGGAGTCCATCCGCAAAGCCATCTTACCGATTTTAGC 933 Query 16657 GGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTGTATCG----------CAA 16706 || || || || || ||||| ||||| || || || ||||| ||||| | Sbjct 934 GGCGTCCTACAGGCAGATGCTTACGCAGGATTTAATGAGCTATATCGGGAAGACCGCCCC 993 Query 16707 TGGTGG--GATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTG 16764 | | || ||||| ||||||||| ||||||||||||||| | ||||||||||| |||||| Sbjct 994 TCGGGGACGATAAAGGAAGCTGCTTGCTGGGCTCATGCCAGGCGAAAGATCCATGATGTG 1053 Query 16765 CACGTCCGCATCCCGTCAGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTAC 16824 || |||| | || || | || | |||||||| | | || |||||| | ||| Sbjct 1054 CATATCCGAACGCCATCGGACAACACACACGAAGCCCTCAAACGAATTGGTCAGCTTTAC 1113 Query 16825 GCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGCAGCGGCTTGCTGAACGTCAGCGA 16884 | | || || || | | || ||| | ||||| || ||||| || ||||| | || Sbjct 1114 AGCCTTGAAGCAGAACTGCGTGGCATGTCAGCAGAACACCGGCTGGCAGAACGAGAACGG 1173 Query 16885 AAAACGAAACCGTTGTTGAAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACCCTG 16944 | || || || || || | ||||||| |||||| || |||| |||| |||| Sbjct 1174 CGGGCAAAGCCCTTACTGGAAGCGCTGGAAATCTGGTTACGGGAAAGGATGTCCTCCCTC 1233 Query 16945 TCGCGACACTCAGAGTTGGCGAAGGCGTTCGCGTACGCACTTAACCAGTGGCCGGCACTG 17004 ||||| ||||||||||||| ||||| ||||| || || | || |||||| | |||||| Sbjct 1234 TCGCGTCACTCAGAGTTGGGCAAGGCCTTCGCCTATGCCTTGAATCAGTGGTCAGCACTG 1293 Query 17005 ACGTACTATGCGAACGATGGCTGGGTGGAAATCGACAACAACATCGCTGAAAATGCCCTG 17064 |||||||| || | | |||||||| || | ||||||||||| || || ||||| || Sbjct 1294 ACGTACTACGCCGAAAACGGCTGGGTAGAGGTGGACAACAACATAGCGGAGAATGCGCTA 1353 Query 17065 CGGGCGGTCAGTCTGGGTCGTAAAAACTTCCTGTTCTTCGGCTCTGATCATGGTGGTGAG 17124 ||| ||| || |||| || || ||||||||||| || |||||||| ||||| ||||| Sbjct 1354 CGGCTGGTGAGCTTGGGGCGAAAGAACTTCCTGTTTTTTGGCTCTGACCATGGAGGTGAA 1413 Query 17125 CGGGGAGCGCTACTGTACAGCCTGATCGGGACGTGCAAACTGAATGACGTGGATCCAGAA 17184 |||||||| | |||||||| || |||| || ||| |||| | || || || || Sbjct 1414 CGGGGAGCCTTGTTGTACAGCTTGCTCGGCACCTGCCGGTTGAACGGTGTAGACCCGGAG 1473 Query 17185 AGCTACCTTCGCCATGTGCTTGGCGTCATAGCAGACTGGCCGGTCAACCGGGTCAGCGAA 17244 ||||| || |||||||| ||| || || ||||||||||| |||||||| ||||| Sbjct 1474 CATTACCTGCGGCATGTGCTGAACGTGATCGCCGACTGGCCGGTGAACCGGGTTGGCGAA 1533 Query 17245 CTGCTTCCGTGGCGCATAGCACTGCCAGCTGAATAA 17280 ||||| || ||||| | || ||||| | |||||| Sbjct 1534 CTGCTGCCATGGCGTGTTGCTCTGCCCACGGAATAA 1569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198723172739092