Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq656 201 1e-46 seq351 100 3e-16 >seq656 Length=490082 Score = 201 bits (222), Expect = 1e-46 Identities = 510/756 (67%), Gaps = 26/756 (3%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| |||||| || | | ||||| | ||| ||||| |||| ||| || | | Sbjct 300681 AGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTG 300622 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | | ||||| ||||||||||| || || ||||| || || | Sbjct 300621 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAG 300562 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223 || || |||||| |||| ||||| ||| |||||||||||| | ||||| ||| Sbjct 300561 GCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 300502 Query 146224 C---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAA 146280 | || || ||| | ||||| || || |||||| | | | ||||||| Sbjct 300501 TTCAGCAGCTT---CCAGTCCCACA--TG-TCGGTGGGAGTCTTCTCCCACATGTCGTAC 300448 Query 146281 TGCATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATC 146337 || | |||| || || |||| | ||| ||||| || |||||||| | || Sbjct 300447 TGGAGGATGCCTTTGCTGA-CAGGTGAGCCTTC--GTACGTCTCGTAAGGACCCA-GCTC 300392 Query 146338 TTG-GCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA 146396 | |||||||||||||| || ||||| || | |||| |||||||| ||| | Sbjct 300391 TGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGAT 300332 Query 146397 GTTGACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCG 146454 ||||| || || || || | || ||| | ||| || || | || | |||||||| Sbjct 300331 GTTGA-GCAGTTGAGCTTCTGGGCTTTCGAACGGG-TAACGCATCAGGATGAAGGCGTCT 300274 Query 146455 GCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCC 146514 || | |||||| | |||| || | ||| ||||| ||||| || | || | Sbjct 300273 GCCAAACCCTGGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCG 300214 Query 146515 GCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTC 146574 | ||| |||| |||| | || ||||||||||| || || ||||| | || || Sbjct 300213 GGTACGGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTG 300154 Query 146575 AAACGATTC-AGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGAC 146633 | ||| | ||| | |||| || || | | ||| |||| || |||||| Sbjct 300153 AC-CGAGGCCAGCTTCTTAAAGTCGAAAGTCC--GCTCAGGCGT-GACGTACATGTTGAG 300098 Query 146634 GGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTC 146693 |||||| ||||||| |||||| || || |||||||||| | |||| ||| ||||| Sbjct 300097 GGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTC 300038 Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCA 146753 | |||||||||||||||||||||| |||||| || | ||||| || | ||||||| Sbjct 300037 CGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCA 299978 Query 146754 GGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || ||||||||| |||||||| || ||||||||| Sbjct 299977 GGCGTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTC 299942 >seq351 Length=862037 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| || ||| Sbjct 703916 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 703857 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| ||| || |||| Sbjct 703856 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTG 703797 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || || ||||| || || Sbjct 703796 ACGTTCTCGATGGTGTCGCTTGGCTCCACCTCAAGGGTGATGGTCTTACCGGTGAGGGTC 703737 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 703736 TTCACAAAGATCTGCATG 703719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475445766726160