Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq656 136 4e-27 seq761 86.0 6e-12 >seq656 Length=490082 Score = 136 bits (150), Expect = 4e-27 Identities = 881/1406 (63%), Gaps = 48/1406 (3%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || | | || | |||||| Sbjct 299231 AAAGTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAAAA 299290 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || ||| | || || ||| | || |||| | || | ||||| ||||| Sbjct 299291 GACATTGACGCCGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCC 299350 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || || | ||| |||||| || || | | ||| |||| || || ||||| Sbjct 299351 TCGCCAACCCTCTTCAACGCCGGGACCAACCGGGCGCAGCTGTCCAGCTGCTTCCTGCTC 299410 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || || || | ||||| | ||| Sbjct 299411 GCCATGAAGGATGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATT 299470 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||||| | ||||| || |||||| ||| | | | ||| || ||| | Sbjct 299471 TCCAAATCCGCTGGCGGGATCGGCGTGGCGGTGAGCTGCATCAGATCGACTGGGAGCTAC 299530 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 ||| |||| |||| | | || ||||| | | |||||||| |||||||| ||| Sbjct 299531 ATCGCTGGCACTAACGGCAACTCCAATGGGCTGGTCCCGATGCTGCGGGTTTACAACAAC 299590 Query 123258 GCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAAA--GGCGCGATGGCGATCTATCTA 123314 ||| || | || |||||||| ||||| | || | || || | || || || || Sbjct 299591 ACCGCCCGCTATGTTGACCAGGGTGGCAACAAGCGACCGGGAGCCTTCGCCATGTACCTG 299650 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAA 123374 || ||||||||| ||||||||| ||| || | | | || |||| || ||| Sbjct 299651 GAGCCGTGGCACTTTGATGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAG 299710 Query 123375 GAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGC 123434 || ||| |||| | || | || ||||| | ||| | || || |||| ||| | Sbjct 299711 GAGCAGAGAGCCAGAGACCTATTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGA 299770 Query 123435 GTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGAC 123494 || | | || | ||||| || ||||||||| | ||||||||| || ||| Sbjct 299771 GTGGAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAACGAGTGTCCCGGGCTGGACGAG 299830 Query 123495 GTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-----AAC 123549 | || | ||||||| || | ||| | |||| || ||||| | || Sbjct 299831 TGCTGGGGGGAGGAGTTTGAGAAGCTCTACACTAAATATGAAAAGGAAGGGAGGGTGAAG 299890 Query 123550 AGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAA 123609 | | | || | | | ||| || ||| | | || ||||| | || |||| Sbjct 299891 AAGGTGGTGAAGGCTCAGCAGGT---TTGGT--ACGCCATCATCGAGTCTCAGACGGAAA 299945 Query 123610 CCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACT 123669 |||| ||||| |||||||| ||||| ||||||||||||||||| | ||| ||| ||| Sbjct 299946 CCGGGACGCCCTACATGCTTTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACC 300005 Query 123670 TGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA---GCGATGCCG 123726 |||| || || || || || || || ||| | || || | || |||| || | | || Sbjct 300006 TGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGATCGTGGAGTACACCAGCAAGGACG 300065 Query 123727 ATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACG--- 123783 | ||||| || ||||| |||| || || | | || | |||| ||| Sbjct 300066 AG---GTGGCGGTCTGTAACCTGGCCTCCATCGCCCTCAACATGTACGTC----ACGCCT 300118 Query 123784 --GCG--CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTG 123839 ||| |||| | || | | ||| | || || | || ||||| || Sbjct 300119 GAGCGGACTTTCGACTTTAAGAAGCTGGCCTCGGTCACCAAGGTGATCGTGAAGAACCTG 300178 Query 123840 AACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAA 123899 ||||| || || || | || | || || | ||||| ||| || ||| Sbjct 300179 AACAAGATCATTGAGATCAACTACTACCCCGTACCCGAAGCAGAGAGGTCCAAC---AAA 300235 Query 123900 C---ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGC 123956 | || | || |||| | || | || || ||||| ||||| || | || |||| Sbjct 300236 CGCCACCGGCCCATCGGGATCGGAGTCCAGGGTTTGGCAGACGCCTTCATCCTGATGCGT 300295 Query 123957 ATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTAT 124016 |||| ||||||| ||||| | |||| || | || || ||| || || || Sbjct 300296 TACCCGTTCGAAAGCCCAGAAGCTCAACTGCTCAACATCCACATCTTCGAGACCATCTAC 300355 Query 124017 TACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTAC 124076 |||| ||| ||||||| ||||||||||| ||| | | || | ||||| | ||| Sbjct 300356 TACGCCGCCCTGGAGGCCAGCTGCGAACTGGCGGCAGAGCTGGGTCCTTACGAGACGTAC 300415 Query 124077 GCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTG---GAATGCT-ACACC 124132 | ||| || | ||| ||| || | |||||||||||||| ||| || |||| Sbjct 300416 GAAGGCTCACCTGTCAGCAAAGGCATCCTCCAGTACGACATGTGGGAGAAGACTCCCACC 300475 Query 124133 GACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGT 124190 |||| |||||||||||| | | || | | | |||| | ||||| || | Sbjct 300476 GACA----TGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACACGGCGTGAGG 300529 Query 124191 AACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAAC 124250 ||| ||| || |||| |||||| ||||| |||| ||||| || | || |||||| Sbjct 300530 AACAGCCTGCTGCTGGCCCCCATGCCCACGGCCTCCACCGCTCAGATCCTGGGCAACAAC 300589 Query 124251 GAATCCTTCGAGCCGTTCACTAACAA 124276 || ||| ||||| | | ||| | ||| Sbjct 300590 GAGTCCATCGAGGCCTACACCAGCAA 300615 >seq761 Length=414005 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || || || |||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 275302 GAGACGGGTACTCCCTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 275243 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 || |||| || || |||| || ||||| ||| | ||||| | ||||| Sbjct 275242 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAAATAGTAGAATA 275193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451950886279640