Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq139 122 1e-22 seq235 93.3 6e-14 >seq139 Length=1410976 Score = 122 bits (134), Expect = 1e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||||| || || || | || |||||||||||||| ||||||||| || Sbjct 1333396 GCGGTGTTGACGATGTCGAAGCCGACTGCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 1333337 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||||||||| ||| |||| | ||||| | ||| || |||||||||| || | Sbjct 1333336 GGGGAGCAGATTGGATTCCCCATCAAGCCTTTGAGGGAGAAAGGAGCCCCCATTTCCACC 1333277 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || |||||||| | || || ||||| || | | || | ||| || Sbjct 1333276 ATCGTCTCCCCAAAGATGGCGTTCTGTCGGGGCTTTTCCACCAGCAGCCCTGGGTAAAGC 1333217 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || || || || ||||| || || | ||||| ||| || || || || || ||| Sbjct 1333216 TCCACGGCGTCAACATCGCCGTACAGCTCCTCCAATATGGCGGCCATTTCTTTGTCTCCT 1333157 >seq235 Length=1098308 Score = 93.3 bits (102), Expect = 6e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || |||||||| || || || | || || || |||||||| |||||||| | || || Sbjct 962505 TTTACGATGTCGAAGCCGACTTTGCCTCCAAATGTGCTGGGCTTCCAGTATTCTGGAGAA 962446 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || ||| ||| ||| ||| ||||| | |||||||||||| |||| || | ||||| Sbjct 962445 CATATGGGGTTTCCCAGGAGGCCTTTGAGGGAAAACGGAGCACCCATTTCCACCATGCTT 962386 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 | || |||||||| || || || | || || | | || |||| || | ||| | | Sbjct 962385 TGTCCAAAGATGGCCCCCGGTCGAGTCTTCTCCAGCAGTAACCCAGGATAAAATTCAAGA 962326 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTC 9147 || || | || ||||| || |||| Sbjct 962325 GCGTCAATATCACCATAAAGCTCTTC 962300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723644237530600