Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq656 176 6e-39 seq761 98.7 1e-15 seq197 95.1 1e-14 seq258 91.5 2e-13 >seq656 Length=490082 Score = 176 bits (194), Expect = 6e-39 Identities = 887/1388 (64%), Gaps = 38/1388 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| || || |||||| Sbjct 300621 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAG 300562 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || |||||||| | | || || ||| Sbjct 300561 GCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 300502 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 || || | |||||| | || | | | ||||||||| || |||||||| Sbjct 300501 TTCAGCAGCTTCCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAGG 300442 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || |||| | | || || || || | ||||| || || ||| | |||||| | Sbjct 300441 ATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGT 300382 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 ||| |||| ||||| ||||| |||| || || ||||| || ||| | || | || Sbjct 300381 TCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGA--GCA 300324 Query 116203 -TTGGCCTCGTCGGAAT-CAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 ||| || | || | | |||| | ||| || || || | || || | ||| | Sbjct 300323 GTTGAGCTTCTGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCT 300264 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGC----GGTCTCCACG 116316 |||| |||| || || || || || | | || ||| | || ||| ||| Sbjct 300263 GGACTCCGATCCCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGT----ACG 300208 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || | || | || || | | | || || || || || ||||| |||| Sbjct 300207 GGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAG 300148 Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 ||||| | | || ||| | || ||| |||| ||| | |||||||| Sbjct 300147 GCCAGCTTCTTAAAGTCGAAAGTCCG---CTCAGGCGTGACGTACATGTTGAGGGCGATG 300091 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || ||||| ||||| || | ||| ||||| |||||||| | || ||||| || Sbjct 300090 GAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCAG 300031 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 | || | ||| |||||||||| ||||| || || ||| |||| || || ||| Sbjct 300030 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCC 299971 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACA 116616 ||||| ||||| || |||||||| || ||||| || |||| || || || | ||| || Sbjct 299970 TTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACC 299911 Query 116617 T-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 | | | | || || | || | | ||| |||| || || || |||||||| Sbjct 299910 TGCTGAGCCTTCACCACCTTC-TTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTT 299852 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||||||||| || ||| |||| ||| ||||| || || | ||||| | || | Sbjct 299851 CTCAAACTCCTCCCCC-CAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGG 299793 Query 116735 ACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 |||| | || | ||| || | ||||||||| ||||| |||||||| | || | Sbjct 299792 ACCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTA 299735 Query 116793 GAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 116851 ||| || || | | | ||| || | | || || || || ||||| |||| Sbjct 299734 GAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGT 299676 Query 116852 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC--TTGC--GACGA 116907 | | | ||| ||||||||| |||||||||| |||| | ||| | || | | Sbjct 299675 CGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTG- 299617 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 ||| |||||| ||||| | || || ||| | || || ||||| || | | ||| Sbjct 299616 CCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCA 299557 Query 116968 TCAGATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTG 117026 | || | ||| || || || ||| | | || | ||||| | | Sbjct 299556 TTGGAGTTGCCGTTAGTGCCAGCGATGTAGCTCCCAGTCGA-TCTGATGCAGCTCACCGC 299498 Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086 || || || || || || | || || || | ||||||| | | || || ||||||| Sbjct 299497 CACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGAT 299438 Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146 || ||||| |||| |||| | |||| ||||||||||| |||| || | || || Sbjct 299437 GCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCC--GG 299380 Query 117147 T--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTT 117203 | || || ||||||||||||||||| | |||||| ||||| || | | |||| | Sbjct 299379 TTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAG 299321 Query 117204 ATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 | ||||||||| | | | | | |||||||| ||||| ||||||| || |||| ||| Sbjct 299320 GTTGTAGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGGATACCGACCGACACCCTCAT 299261 Query 117264 AAACATGT 117271 | ||||| Sbjct 299260 GAGCATGT 299253 >seq761 Length=414005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | ||||||||||||||| ||| ||||| ||||| Sbjct 273630 TAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 273689 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| ||||||||||| Sbjct 273690 GCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 273721 >seq197 Length=1194064 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 127552 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 127611 |||||||||||| |||||| || || |||||||| || | |||||| | |||| | || Sbjct 1112699 GATGAGTTCATTGGAGAAGGTAAGGCCGGGCATGAGGCCTCTCTTCTTTAGCCAGTAGAT 1112640 Query 127612 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||| ||||||||| ||||||||||||||||| ||| || || || | || ||||| Sbjct 1112639 GGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 1112580 >seq258 Length=1028905 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||| ||| || ||||| || || || |||| Sbjct 692635 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 692576 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || || ||| ||||||||||||||||| |||||||| ||||||| Sbjct 692575 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 692516 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 692515 CCACCACACGCTC 692503 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||| ||| || ||||| || || || |||| Sbjct 706596 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCAGGCATCAGGCCGCGTTTCT 706655 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || || ||| ||||||||||||||||| |||||||| ||||||| Sbjct 706656 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACTGCGGCGAACG 706715 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 706716 CCACCACACGCTC 706728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613436194210440