Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq656 248 1e-60 seq761 104 4e-17 >seq656 Length=490082 Score = 248 bits (274), Expect = 1e-60 Identities = 594/889 (67%), Gaps = 22/889 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||||||||| ||||| | ||| | |||||| | |||| | ||||||||| Sbjct 300049 CTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 299990 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| | ||| |||| ||||||||| | |||| | ||| | ||| | ||| ||||||| || Sbjct 299989 CTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTC 299930 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAG 205058 | || || | ||| | | |||||| |||| | |||||| | |||||| Sbjct 299929 GATGA-TGGCGTACCAAACCTGCTGAGCCTTCACCACCTTCTTCAC---CCTCCCTTCCT 299874 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 || ||||| ||||| ||| | |||| || || | || |||||| |||| | Sbjct 299873 TTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCGG 299817 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| | |||||||||||||| ||||| ||| | | | ||| |||| ||| |||| Sbjct 299816 GACACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 299757 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 |||| |||||||| | |||| || || || | ||| || | || | ||| || Sbjct 299756 GGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 299697 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| |||| ||||| ||| || | | || |||||||||||| | ||| ||| Sbjct 299696 TCTTCTTCAGCTCCAGG-AAGTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCG 299638 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || | |||||| ||||||||||| || ||| | | |||| |||| Sbjct 299637 AAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACC 299578 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 ||||||||||| ||||| || |||| | | ||||| |||| |||| ||| || Sbjct 299577 CGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCAGCGATG---TAGCTCCCA 299521 Query 205415 GCC---CTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCG 205471 | | || | | | | ||| |||| |||||||||| | |||| || ||||| Sbjct 299520 GTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCG 299461 Query 205472 CACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531 |||| | ||| ||| ||||||||| ||||| || ||| || | | ||| || Sbjct 299460 CACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAG 299401 Query 205532 CACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 || | ||||| || |||||| || |||| |||||| || || ||||||| || Sbjct 299400 CAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTG 299341 Query 205592 AAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGA 205651 || | |||||| || |||||||||| | || || | || ||||| Sbjct 299340 AACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCGTCAATGTCTTTTCCGTGG 299281 Query 205652 ATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACC 205711 ||||| | | | |||||||| | ||| || || | ||| ||| || |||| | | Sbjct 299280 ATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATC 299221 Query 205712 TTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 || |||||||||| | ||| ||||| || | |||| |||||| ||| Sbjct 299220 TTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTGTAGG 299172 Score = 197 bits (218), Expect = 2e-45 Identities = 297/421 (71%), Gaps = 1/421 (0%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| ||| |||||| | || || ||||||| ||||| ||| Sbjct 300749 CCTGAATGGATCCGTTGTTGGCGATCAGTTTGTTCTTCATCTCCTCGTTCCACAGCCCCC 300690 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| ||| | ||||| || |||| |||||| || |||||||| || |||| Sbjct 300689 GCTCCGTCAGGTCCTTGAGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCC 300630 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | |||| | |||||||||||| | ||||||| Sbjct 300629 TGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAG 300570 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 ||||| ||||||||||||||| ||||| |||||| ||| | ||| |||| ||| || Sbjct 300569 CGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGA 300510 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398 | | |||||| ||||||| ||| | |||| || ||||||||||| Sbjct 300509 TCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGT 300450 Query 204399 ACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTT 204458 |||| | |||||||| ||||| || ||| | ||||||| ||||| |||| Sbjct 300449 ACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTG 300390 Query 204459 CTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGT 204518 | ||||| | ||| ||| ||| |||| ||||| |||||||| ||||| || | || Sbjct 300389 CCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGT 300330 Query 204519 T 204519 | Sbjct 300329 T 300329 Score = 100 bits (110), Expect = 5e-16 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | |||||| | |||||| || || |||| Sbjct 301021 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGTTTCCCGTAGTTGGGCTCTGCGATGT 300962 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||||||||||||||| || || ||| | |||||| || ||||| ||||| || | Sbjct 300961 GGATGTTCAGAGACTGGCTCTGATCTATGTA-GGCGCCACGGTCTGCAGCCATCTTTAGC 300903 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| || ||||||||||| || || || Sbjct 300902 ACAGTCTTTTGGGAAATCTCCCAAACGGTTTT 300871 >seq761 Length=414005 Score = 104 bits (114), Expect = 4e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| || ||||||| |||||| || || |||||||| Sbjct 272662 CTTCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCGATGTGAAT 272721 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| |||||||| || || |||||| ||| | |||||||| ||||| |||| | || Sbjct 272722 GTTGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGACAGT 272781 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||| || || ||||| || || || Sbjct 272782 CTTCTGGGAGATTTCCCAAACTGTTTT 272808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795063170725040