Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq258 129 6e-25 seq351 125 7e-24 seq197 93.3 4e-14 >seq258 Length=1028905 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| ||||||||| ||||||||||| | Sbjct 692635 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 692576 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||||||| || ||| || ||||||| ||||| ||||| ||||| | Sbjct 692575 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 692516 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 692515 CCACCACACGCTCTCC 692500 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| ||| ||||| ||||||||||| | Sbjct 706596 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCAGGCATCAGGCCGCGTTTCT 706655 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||||||| || ||| || ||||||| ||||| || || ||||| | Sbjct 706656 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACTGCGGCGAACG 706715 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 706716 CCACCACACGCTCTCC 706731 Score = 100 bits (110), Expect = 3e-16 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| || |||| |||| | |||| Sbjct 692032 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAACGCCAAAACGTACGAGATG 691973 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 || || |||||| | | ||| || | |||||||| || ||| |||||||| ||||| Sbjct 691972 AAGTGACGCTCG-TCTGGTTTCAGAGACTCCCAGTGCTGCAGGTCTTTGGACAGATCCAC 691914 Query 133398 CT 133399 || Sbjct 691913 CT 691912 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| || |||| ||||| ||| Sbjct 707199 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAACGCCAAAACGTGAGAGATA 707258 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 |||| ||||| | |||| |||||||| || ||| |||||||| |||||| Sbjct 707259 AAATAACGCTCCTCTGATTTCAGAGACTCCCAGTGCTGCAGGTCTTTGGACAGATCCACC 707318 Query 133399 T 133399 | Sbjct 707319 T 707319 >seq351 Length=862037 Score = 125 bits (138), Expect = 7e-24 Identities = 171/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 ||||| ||||| || || || || || ||||| || || ||||||||| | || || ||| Sbjct 703714 AAAAACATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTTGAGGTGGAG 703773 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | ||||| | | | |||| | || | || |||| || || ||||| || ||| | Sbjct 703774 CCAAGCGACACCATCGAGAACG-TCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCCCC 703832 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 ||||| ||| |||| || | || ||||| |||||||| || | |||||||| ||| Sbjct 703833 TGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGA 703892 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||||||||| ||||| | || || || |||| || ||| | || || |||| Sbjct 703893 CTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGTCTCAGGGGTGGCC 703948 >seq197 Length=1194064 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 || |||||| |||||||| ||| ||| || | ||||||||||||||| | || || Sbjct 1112710 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATGAGGCCTCTCTTCTTT 1112651 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| | ||||| || || ||| || ||||||| ||||| || || || |||||| Sbjct 1112650 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 1112591 Query 133039 ACCAGGCGCTCGCC 133052 ||||| ||||| || Sbjct 1112590 ACCAGTCGCTCCCC 1112577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500114911250560