Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq186 183 1e-40 seq1004 89.7 2e-12 seq5 86.0 2e-11 >seq186 Length=1290931 Score = 183 bits (202), Expect = 1e-40 Identities = 461/692 (67%), Gaps = 9/692 (1%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| || ||||| || ||||||| || ||||| || |||| ||| ||||||| || Sbjct 651105 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTTGGGGTTTTCCAGCATGGAAAAGTG 651164 Query 450977 GAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035 ||||| || || || || ||||| | || || | |||||| | || ||||| || Sbjct 651165 GAAATCATTGCCAACGATCAAGGCAACAGGA-CAACTCCTAGCTATGTTGCCTTTACTGA 651223 Query 451036 TTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACA 451094 |||| ||||| | || | |||||||| | | | | | | || ||| ||||| Sbjct 651224 CACAGAGAGACTCATTGGAGATGCTGCTAAGAACCAAGTTGCCATGAACC-CCACAAACA 651282 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154 | || | |||||| ||||| | ||||| | | | |||||| || |||| | Sbjct 651283 CTGTCTTTGATGCCAAACGGCTCATTGGAAGAAGATTTGATGACCCAGTGGTTCAAAGTG 651342 Query 451155 AGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAA 451214 | | ||| ||| | | | || || ||| | || || |||||| | | || || Sbjct 651343 ACATGAAACTCTGGCCCTTCAAGGTGGTCAATGACAATGGGAAGCCCAAAGTCCAGGTGG 651402 Query 451215 ATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTA 451274 | ||||| || ||||| || ||||| |||||| || ||||| || ||||| || || Sbjct 651403 AATATAAGGGAGAAACAAAGACTTTCTGTCCTGAGGAGATTTCTTCAATGGTCCTGGTTA 651462 Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAATTACT 451333 |||||| ||||| ||| || | | |||| | | || || ||| || || || Sbjct 651463 AAATGAGAGAAATAGCTGAGGCCTTT-TTGGGACAGAGGGTATCGAATGCGGTCATCACA 651521 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| ||||| || || ||| | || ||||||| || || ||||| ||| || | Sbjct 651522 GTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGGAGTAATCTCG 651581 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 || |||||||||| || || || ||||| || |||||||| || | || ||||| || Sbjct 651582 GGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGCCTATGGCCTG 651641 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||| ||| | || ||| ||| || | | |||||| | |||||||| ||| Sbjct 651642 GATAAAGGTAAA---AGAGGAGAGCGCAATGTTCTCATCTTTGATCTAGGTGGAGGCACT 651698 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||| || | || | ||||||||||| ||||||| ||||| || || || Sbjct 651699 TTTGACGTGTCAATCCTGACCATTGAAGATGGCATATTTGAGGTAAAAGCCACAGCAGGG 651758 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || || || || || || |||| || Sbjct 651759 GACACACACCTCGGTGGGGAGGACTTTGACAA 651790 >seq1004 Length=291928 Score = 89.7 bits (98), Expect = 2e-12 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289 |||||||||| | || ||||| ||||||||||| ||||| ||||| | | Sbjct 41211 TGAAGGAGAAAGAGCCATGACCAAAGATAATAATATCTTAGGAAAATTTGAATTGACCGG 41152 Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349 |||||| ||| ||||| ||| ||| || || || | |||| ||| | ||||| || Sbjct 41151 CATTCCACCTGCCCCAAGAGGAGTTCCCCAGATCGAGGTGACCTTTGACATCGATGCTAA 41092 Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCATCTGGAAAATCAGAA-AAAATTACA 452407 ||| |||||||||||| ||| || || |||| || |||| || |||| ||||| || Sbjct 41091 TGGCATTCTTAATGTGTCTGCGGTCGACAAAAGCA-CTGG-GAAGGAGAATAAAATCACC 41034 Query 452408 ATTACTAATGATAAA 452422 || || ||||| ||| Sbjct 41033 ATCACCAATGACAAA 41019 >seq5 Length=3291551 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | ||||| ||||| || |||||||| | || || || || || Sbjct 169817 GTTACAAATGCTGTGGTGACTGTACCCGCCTACTTCAATGACTCCCAGCGCCAGGCTACC 169758 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || || |||| | ||||| || |||||||||||||| || ||||| Sbjct 169757 AAAGATGCTGGGACCATCTCTGGGCTGAATGTCCTGCGAATTATTAATGAGCCCACAGCT 169698 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| | || ||||| || Sbjct 169697 GCTGCCATCGCTTATGGCCT 169678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975484018673972