Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq186 363 2e-95 seq5 158 2e-33 seq1004 145 1e-29 seq489 93.3 5e-14 >seq186 Length=1290931 Score = 363 bits (402), Expect = 2e-95 Identities = 1003/1524 (66%), Gaps = 14/1524 (1%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || | || ||||| || |||||||| |||||||||||||| || ||||| Sbjct 652675 TCATCCTCTGCCTTGTACTTGTCAGCATCTTGCACCATCTTTTCAATCTCATCTTTGCTG 652616 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | ||| ||||| ||||| ||||| || || || | ||| || | | || || | Sbjct 652615 AGTCTGCCCTTGTCATTGGTAATTGTGATTTTGTTTTCTTTGCCAGTGCTTTTGTCCACT 652556 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || || | |||||||| ||||| | || || | || | || ||||| | Sbjct 652555 GCAGACACGTTTAGGATACCATTGGCATCTATGTCAAAGGTGACCTCTATCTGTGGCACA 652496 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || || || || | || | ||| || | ||||| | ||||| | | |||| ||| | Sbjct 652495 CCTCTGGGAGCAGGCGGGAGACCTGTGAGCTCAAACTTTCCAAGGAGATTGTTGTCCTTG 652436 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | | | || ||||| ||||| | || ||| | || || || || | | Sbjct 652435 GTCATGGCTCTCTCTCCTTCGTAGACCTGGATCAGGACCCCGGGCTGGTTGTCA-GAGTA 652377 Query 6869 GTTGA-GAAGATTTGT-TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 | || ||| | ||| ||| | || | || || || || || | |||| || | Sbjct 652376 GGTGCTGAACACTTGAGTCTGT-TTGGTGGGGATGGTGGTGTTCCGTTTGATAAGGGGTG 652318 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||||| |||||| || || | || ||||||| |||| |||||||| || | | Sbjct 652317 TCATAACACCACCAGCTGTCTCAATGCCCAGAGACAAGGGTGCCACGTCCAGAAGCAGTA 652258 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 ||||| ||| || || ||| ||| ||| || || ||||| | || |||| Sbjct 652257 AATCTTGGACATTCTCTGAGGTGTCCCCCATTAGGATAGCAGCCTGGACTGCTGCACCGT 652198 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || || ||||| ||||| || | || ||||| ||| |||| || || ||||| Sbjct 652197 AGGCTACGGCTTCATCAGGGTTGATACTCTTGTTCAGATCTCTACCATTGAAGAAATCCT 652138 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 || | | || ||||| ||||||| ||| || ||||| || || || ||||||| | Sbjct 652137 GTAGGAGCTTCTGGATTTTGGGGATTCTTGTAGAACCACCAACTAAGACAATTTCATGAA 652078 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 || |||||||| | || | ||| | || | ||||| ||||| |||| | | Sbjct 652077 TCTTGGATTTATCCAGTTTAGCATCTTGTAGGGACTTTTCAACAGGCTCCAGTGTTCCCC 652018 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 ||| | ||| ||||||||||| ||||| | || || ||||| || || |||| Sbjct 652017 TGAAGAGGTCAGAGTTTAGTTCCTCAAAGCGTGCCCTTGTGATTGATGTGTAAAAGTCAA 651958 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCT 7346 || || | | || ||||| |||||| | | || | | || || || |||| || Sbjct 651957 TCCCCTCAAACAGTGAGTCAATCTCAATGCTAGCCTGGGTGCTGGAGGACAATGTTCTCT 651898 Query 7347 TTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTT 7406 |||| | |||||| ||||| || | | | | || | | || | ||||| | Sbjct 651897 TTGCTCTCTCACAGGCCGTGCGGAGTCTCCTCACTGCTCTCTTATTCTGGCTGATATCCT 651838 Query 7407 TCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTT 7466 |||| ||||| | ||| || || || ||||| | | ||| || || || | Sbjct 651837 TCTTGTGTTTTCTTTTGAATTCCTCCACAAAGTGGTTGACCATTCTGTTGTCAAAGTCCT 651778 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | ||||| | |||||| ||||| || || ||||| || ||||| || || |||||||| Sbjct 651777 CCCCACCGAGGTGTGTGTCCCCTGCTGTGGCTTTTACCTCAAATATGCCATCTTCAATGG 651718 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 | | | || || ||||| || || ||||| || ||||| ||||| || || || | Sbjct 651717 TCAGGATTGACACGTCAAAAGTGCCTCCACCTAGATCAAAGATGAGAACATTGCGCTC-T 651659 Query 7587 CGTCTTTGTTCTT-ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645 | ||||| ||| ||| || || || || || || || || || || ||||| || ||| Sbjct 651658 CCTCTTTTACCTTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGGGCTCATTTATGATA 651599 Query 7646 CGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 || ||| || || || | || | | ||||| || || ||||| | || |||||| Sbjct 651598 CGCAGAACATTTAGTCCCGAGATTACTCCAGCATCCTTTGTGGCTTGCCTCTGGGAATCG 651539 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765 |||||||| || || || || | |||||| | || || ||| || | | | | || Sbjct 651538 TTAAAGTAAGCTGGAACTGTGATGACCGCATTCGATACCCTCTGTCCCAAAAAGGCCTCA 651479 Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA-GCCGCAAACTGTTT 7824 || || ||| ||||||| || ||||| || |||||||| ||| | | ||| | ||| Sbjct 651478 GCTATTTCTCTCATTTTAACCAGGACCATTGAAGAAATCTCCTCAGGACAGAAAGTCTTT 651419 Query 7825 CGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTT 7884 ||||| || ||| | || || | | |||| || | || | || ||||| Sbjct 651418 -GTTTCTCCCTTATATTCCACCTGGACTTTGGGCTT---CCCATTGTCATTGACCACCTT 651363 Query 7885 ATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAG 7944 | | ||| |||||| || ||| ||| | |||| ||| ||||||| || || Sbjct 651362 GAAGGGCCAGAGTTTCATGTCACTTTGAACCACTGGGTCATCAAATCTTCTTCCAATGAG 651303 Query 7945 ACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTC 8004 || || |||||||| || |||||| ||||||||||||| ||||||||| || || || Sbjct 651302 CCGTTTGGCATCAAAGACAGTGTTTGTGGGGTTCATGGCAACTTGGTTCTTAGCAGCATC 651243 Query 8005 CCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCC 8064 || || || | || | | || ||||| || || || || || || | || || Sbjct 651242 TCCAATGAGTC--TC-TCTGTGTCAGTAAAGGCAACATAGCTAGGAGTTGTCCTGTTGCC 651186 Query 8065 TTGGTCGTTCGCAATAATTTCTAC 8088 ||| ||||| ||||| ||||| || Sbjct 651185 TTGATCGTTGGCAATGATTTCCAC 651162 >seq5 Length=3291551 Score = 158 bits (174), Expect = 2e-33 Identities = 363/543 (67%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||| |||||||| | || || ||||| || || ||||| Sbjct 168630 GCACCATAGGCCACTGCCTCATCAGGGTTAATGCTCTTGTTTAGTTCCTTCCCATTAAAG 168689 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | | | || || || || || || || || || || |||| ||||| Sbjct 168690 AAGTCCTGCAGAAGCTTCTGGATCTTTGGAATACGAGTTGACCCTCCCACCAGGACGATG 168749 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 || | || | | || || ||||| | ||||| || | ||||| ||||| |||| Sbjct 168750 TCGTGGACCTGAGCCTTGTCCATCTTGGCATCTCGGAGAGCCTTTTCTACAGGCTCCAGC 168809 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | | || |||| ||| || |||||||| || || | ||| ||||| || Sbjct 168810 GTTCCTCTA---AACAGGTCTGCGTTAAGCTCCTCAAAGCGAGCCCTGGTGATGGACGTG 168866 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 || ||||| | ||| || |||| || |||||||||||| | | || | | || || Sbjct 168867 TAAAAATCGATGCCCTCATATAGGGAGTCAATTTCAATGCTGGCCTGAGTGCTGGAGGAC 168926 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || ||||| || | |||||| ||||| || | || || | || | | ||| | Sbjct 168927 AGGGTACGCTTGGCTCTCTCACAGGCCGTGCGCAGGCGCCGCACTGCCCTCTTGTTGTCA 168986 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA-GAAGTGTCGAAGGAGTCTCGA 7455 || || ||||| | || ||||| ||||| ||| |||||| | | | Sbjct 168987 CTGATGTCCTTCTTGTACTTGCGTTTGAACTC-AGAGATGAAGTGGTTCACCATGCGGTT 169045 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 || ||||||||||||||||| || || || || || || | ||| || || ||||| || Sbjct 169046 GTCAAAATCTTCACCACCCAAATGAGTGTCGCCTGCCGTAGATTTCACCTCGAAGATGCC 169105 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||||| | || | || |||||||| || |||||||| || ||||| ||||| || Sbjct 169106 GTCTTCAATTGTCAAGATGGACACATCAAAAGTGCCACCACCAAGATCAAAGATGAGAAC 169165 Query 7576 GTT 7578 || Sbjct 169166 ATT 169168 >seq1004 Length=291928 Score = 145 bits (160), Expect = 1e-29 Identities = 358/541 (66%), Gaps = 4/541 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 |||||||| || || |||||||| || || || | || || | || ||| ||||| Sbjct 42620 GCCCCGTAAGCAACGGCCTCATCAGGATTGATGCTCTTGTTTAAGTCACGACCATTAAAC 42679 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || | | | ||| || || || || ||||| || ||||| || | ||| || Sbjct 42680 AAGTCTTGCAGAAGCTTTTGGATCTTTGGAATACGTGTGGAACCACCCACTAGAACAATA 42739 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| ||||| | || | || | ||||| ||||| || | Sbjct 42740 TCATGGATCTGGCCTTTATCCATCTTGGCATCCCTCAGGGCCTTTTCCACAGGCTCAAGG 42799 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||||| ||| | || || |||||||| || | ||| || || || ||| Sbjct 42800 GTTCCTCGGAACAGGTCTGCATTGAGCTCTTCAAAACGAGCCCTGGTGATTGAGGTGTAG 42859 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATA 7337 ||||| || || || | || ||||| |||||| | | || ||| | | ||| Sbjct 42860 AAATCTGTTCCCTCATACAGTGAGTCAATCTCAATGCTGGCCTGGGTGCTGCTGGAGAGG 42919 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 || ||||| || ||||||||||| || || | |||||| | || ||| ||| | Sbjct 42920 --GTGCGCTTGGCTCGCTCACACGCTGTACGCAGACGACGTACAGCTCGCTTGTTGTTGA 42977 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 || || || || ||| ||||| |||||| || ||||| || | | | Sbjct 42978 TGATGTCCTTTTTGAATTTGCGTTTGAACTCTGCAATAAAGTGGTTAACCATGCGGTTGT 43037 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 | || || || || ||||| ||||| |||||||| || || ||||| |||||||| || Sbjct 43038 CAAAGTCCTCCCCTCCCAAATGTGTGTCCCCCGCTGTGGCCTTGACCTCAAAGATGCCAT 43097 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | ||||| | | | || |||||||| || ||||| || |||||||| ||||| || | Sbjct 43098 CCTCAATAGTCAGGATTGAGACATCAAAAGTTCCACCTCCAAGGTCAAAGATGAGGACAT 43157 Query 7578 T 7578 | Sbjct 43158 T 43158 >seq489 Length=653289 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 |||||||||||| || || | ||| || ||||| |||||||| | ||||||| || Sbjct 618717 AAACTTTCTTCCAATCAGCCTCTTGGCGTCAAACACTGTGTTGCTTGGGTTCAGAGCCAC 618776 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGA 8046 |||||||| |||||||||||||| || | || | | | || || || || || || Sbjct 618777 CTGGTTCTTGGCCGCGTCCCCGATCAGCC--TC-TCAGTGTCAGTGAAGGCCACATAGCT 618833 Query 8047 TGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 ||||| || | || || ||||| || ||||| |||||||| Sbjct 618834 GGGGGTGGTCCTGTTGCCCTGGTCATTGGCAATGATTTCTAC 618875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635059291317560