Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq656 172 7e-38 seq197 86.0 8e-12 >seq656 Length=490082 Score = 172 bits (190), Expect = 7e-38 Identities = 574/879 (65%), Gaps = 27/879 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||| |||| || |||||||||| || |||| ||||| | | Sbjct 299245 CCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAAAAGACATTGACGCCGC 299304 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| ||| || | |||| | || ||||| |||||| | |||||||||| Sbjct 299305 CATTGAGACCTACAACCTGCTGTCGGAGAAGTG-GTTCACCCACGCCTCGCCAACCCTCT 299363 Query 111730 TCAACGCTGGTACACCAA--GACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 ||||||| || || ||| | | || ||||||| || ||||| | || | ||||| Sbjct 299364 TCAACGCCGGGAC--CAACCGGGCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGA 299421 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || ||| | ||||| |||| ||| || | | || |||| || || || | || Sbjct 299422 TGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 299481 Query 111848 TGGTGGTATCGGGATGCACATCCATGA--TG--TCAGAGCCAACAAGTCTCGTATTAGAG 111903 ||| || ||||| || | ||| || ||||| | | | || | Sbjct 299482 TGGCGGGATCGGCGTGG----CGGTGAGCTGCATCAGATCGACTGGGAGCTACATCGCTG 299537 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 | || || || | || |||| | | || ||||| || || | ||| ||| || | Sbjct 299538 GCACTAACGGCAACTCCAATGGGCTGGTCCCGATGCTGCGGGTTTACAACAACACCGCCC 299597 Query 111964 GCTATGTAAACCAAGCTGGGCGTC--GCAA--GGGATCTATCGCAGTCTATCTTGAGCCA 112019 ||||||| |||| | ||| | | || | |||| | |||| | || || ||||| Sbjct 299598 GCTATGTTGACCAGGGTGG-CAACAAGCGACCGGGAGCCTTCGCCATGTACCTGGAGCCG 299656 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||| ||| | | || ||||| ||| || ||| ||| | |||||| | Sbjct 299657 TGGCACTTTGATGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAG 299716 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 | | | || || |||| ||| | ||||| || || || |||||||||||||| | Sbjct 299717 AGAGCCAGAGACCTATTCTACGCCATGTGGATCCCTGACCTGTTCATGAAGAGAGT---G 299773 Query 112140 GAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGC 112195 ||||| | | ||||| || | ||||| || || ||||| || ||| ||| Sbjct 299774 GAGAGCAACCAGGACTGGTCCCTGATGTGTCCCAACGAGTGTCCCGGGCTGGACGAGTGC 299833 Query 112196 CGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC 112255 | ||| ||||||||||| |||||||| || || || | ||| | ||| || Sbjct 299834 TGGGGG-GAGGAGTTTGAGAAGCTCTACACTAAATATGAAAAGGAAGGGAGGGTGAAGAA 299892 Query 112256 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 | |||| ||| | || ||| | || || || ||||||| || || || || || Sbjct 299893 GGTGGTGAAGGCTCAGCAGGTTTGGTACGCCATCATCGAGTCTCAGACGGAAACCGGGAC 299952 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || || ||||||||||| |||||||| ||| ||||| || || |||| |||| Sbjct 299953 GCCCTACATGCTTTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCAC 300012 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 |||||| | ||||||||| || || ||| |||| | || ||| || ||| ||| Sbjct 300013 CATCAAGTGCAGCAACCTCTGCACGGAGATCGTGGAGTACACCAGCAAGGACGAGGTGGC 300072 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 || |||||||| || || ||||| ||| || ||| || Sbjct 300073 GGTCTGTAACCTGGCCTCCATCGCCCTCAACATGTACGT 300111 >seq197 Length=1194064 Score = 86.0 bits (94), Expect = 8e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 102238 |||||||| | || ||||| ||| ||||| ||||||||||| || || || ||| || Sbjct 1112580 GAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATT-TGCTGC 1112638 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || || ||||| |||||| |||| |||||||| || || ||||||||| || || || Sbjct 1112639 CATCTACTGGCTAAAGAAGAGAGGCCTCATGCCCGGCCTTACCTTCTCCAATGAACTCAT 1112698 Query 102299 C 102299 | Sbjct 1112699 C 1112699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620670556826480