Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq656 107 2e-18 seq716 93.3 5e-14 seq605 93.3 5e-14 seq542 93.3 5e-14 seq417 93.3 5e-14 seq152 93.3 5e-14 seq86 93.3 5e-14 seq28 93.3 5e-14 seq197 87.8 2e-12 seq761 82.4 9e-11 >seq656 Length=490082 Score = 107 bits (118), Expect = 2e-18 Identities = 359/550 (65%), Gaps = 9/550 (2%) Strand=Plus/Minus Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 |||| || || ||| || || || || || || || || | |||||| ||| || Sbjct 300113 TGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGG 300054 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 |||| |||| || ||||| || | |||| | ||| ||| |||| ||||| ||| | Sbjct 300053 TGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 299994 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | || |||||| || ||||| || |||||||| || || || ||||||||||| | Sbjct 299993 TGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAG 299934 Query 110450 ACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCC 110508 ||| || ||||| | ||| || | | | | | || | | || | |||||| Sbjct 299933 ACTCGATGATGGCGTACCAAACCTGCTGAGCCTTCACCACCTTC-TTCACCCTCCCTTCC 299875 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTT 110567 | || || || ||||| | | |||||| |||| || | ||| || || || Sbjct 299874 TTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCAC-TCGTCCAGCCCGGG 299816 Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAAT-TTCCACCCTCCTCAACCCTCTTCATGAACA 110626 || || |||||| | |||||||| | | || ||| || ||||||||||||| Sbjct 299815 ACACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCT-CTCCACTCTCTTCATGAACA 299757 Query 110627 GGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGT 110686 ||||||| |||||||| || |||| ||||| | | | ||| || | ||| || Sbjct 299756 GGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 299697 Query 110687 TGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746 | ||||||| ||||| | | ||| ||||||| || || || || | |||| Sbjct 299696 TCTTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGA 299637 Query 110747 TGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCC 110803 || |||| || || |||||| ||||||||| || ||| ||| | |||| Sbjct 299636 AGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCC 299577 Query 110804 TGAGCATAGG 110813 ||||| || Sbjct 299576 GCAGCATCGG 299567 >seq716 Length=436516 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 37894 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 37952 >seq605 Length=537948 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 252436 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 252494 >seq542 Length=601952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 524825 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 524883 >seq417 Length=760141 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 374158 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 374216 >seq152 Length=1354702 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 164986 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 164928 >seq86 Length=1669145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 7766 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 7708 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 597705 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 597763 >seq28 Length=2302425 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 583378 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 583320 >seq197 Length=1194064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574 ||||||||| |||||| ||||| |||| ||| || |||||||| ||||| |||| Sbjct 1112712 CTTCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATGAGGCCTCTCTTCT 1112653 Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAG 119634 ||||||| |||||||| ||| || || |||||||| ||||| ||| || |||| Sbjct 1112652 TTAGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAG 1112593 Query 119635 CGAATAGACGCTC 119647 | | || ||||| Sbjct 1112592 CCACCAGTCGCTC 1112580 >seq761 Length=414005 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| | || | |||||||||| || ||||| || |||||||| Sbjct 273629 GTAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGA 273688 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 |||||||||||| || |||| ||||| ||||| Sbjct 273689 AGCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 273721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588907833390200